Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0553 ATGGAGCTGACCAAATCATCTGGCTCAATCGTGGAGGAATCGATTGATTGGTCCTCCGATGAAGGCAAGAATATGAGCCGAAGCAGCATCTCCTACGCTGATAGAACTGATTCAAAGGAGAGGTGCCTTCGGAGAAGGCGCAGAGCTAAGGATCCGTCGAAGGTAGATTTCGAGGAGAGTTCTAGCTACAGGCGCAAAATTAAGAGTTCATCGGAAAGTGAACCCGAGGAGAGCCGGCACAAAGTTGAGAAAAGCGATTCTGAGGCAAGACTTTATTTCAGTGATACTGAATGGAACTTACAAAGTGATGGAGAGGGAACTGGTCAAAGAAGTCGAAGTAACCAAGGAAGAATAGCGAAGACGATGTGGGATGAAAACGTGATCCGCCGTGCGCCATTGTACAGAGCGGCGCTAATGGGTCAATGGGAGGTTGCAGAAACCATTTTCAACCAAGATTCTAGCGTGATTACGTCTAAGATCACCCTCTTGAACGAGACTTCTCTCCATGTAGCAGTCGGCACCGACGACAATTCGGATTTTCTGGAAAAGCTTGTGAACCTTATGTGTGAACGATCGCTATCGCTTACACAGGTAGATTTATGTGGCAATACTGCACTTGCTGTTGCCGCCATTGTTGGGAATGTTAAGGCTGCACAAATCTTGGTTTGGAAAAACGAGACCCTGCCTTCGATTAAAAATAAGGTCAATTACTCACCCCTTCATCTCGCAGCCAAATATGGGCACAGGGACATGATTTTGTATCTTCTATCAGTGACCAAGGATGAATGGGTATTTATTGGTAAAGCTGGTGCTAGGCTTCTCAATCTTCTGATTACATTTGATATCTATGGT 852 45.66 MELTKSSGSIVEESIDWSSDEGKNMSRSSISYADRTDSKERCLRRRRRAKDPSKVDFEESSSYRRKIKSSSESEPEESRHKVEKSDSEARLYFSDTEWNLQSDGEGTGQRSRSNQGRIAKTMWDENVIRRAPLYRAALMGQWEVAETIFNQDSSVITSKITLLNETSLHVAVGTDDNSDFLEKLVNLMCERSLSLTQVDLCGNTALAVAAIVGNVKAAQILVWKNETLPSIKNKVNYSPLHLAAKYGHRDMILYLLSVTKDEWVFIGKAGARLLNLLITFDIYG 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3644332 3645371 + MC10g0450 Mch10g0553 677646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0553 284 ProSiteProfiles Ankyrin repeat profile. 235 257 IPR002110 GO:0005515(InterPro)
Mch10g0553 284 Pfam Ankyrin repeats (3 copies) 168 257 IPR002110 GO:0005515(InterPro)
Mch10g0553 284 SMART ANK_2a 128 158 IPR002110 GO:0005515(InterPro)
Mch10g0553 284 SMART ANK_2a 235 266 IPR002110 GO:0005515(InterPro)
Mch10g0553 284 SMART ANK_2a 201 230 IPR002110 GO:0005515(InterPro)
Mch10g0553 284 SMART ANK_2a 163 193 IPR002110 GO:0005515(InterPro)
Mch10g0553 284 ProSiteProfiles Ankyrin repeat region circular profile. 235 257 - -
Mch10g0553 284 MobiDBLite consensus disorder prediction 49 88 - -
Mch10g0553 284 PANTHER - 118 261 - -
Mch10g0553 284 SUPERFAMILY Ankyrin repeat 127 258 IPR036770 -
Mch10g0553 284 Gene3D - 102 265 IPR036770 -
Mch10g0553 284 MobiDBLite consensus disorder prediction 1 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0553 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0553 Mch-Chr10:3644332 Mch9g0085 Mch-Chr9:693074 1.59E-24 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g773 . . . . Bpe03g00157 . . . Cmo16g00103 . . . . . Sed13g0543 . Cpe14g00080 Bhi01g01589 Tan01g0786 . . . Mch10g0553 . . . . . . . . Cone1ag1195 . . Cone15ag0060 Lsi05g01188 . . . . Blo09g00058 . . . . . . . . . Cma16g00096 . Car16g00086 . . . . . . . . . . Cla05g00919 Cam05g1007 Cec05g1011 Cco05g1007 Clacu05g0995 Cmu05g0950 Cre05g1031 . Csa03g01752 Chy06g00981 .
Vvi16g779 . . . . . . . . . . . . . . Sed13g0543 . . Bhi01g01589 Tan01g0786 . . . Mch10g0553 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000053 7 13 4 5 0 9 1 8 10 14 9 9 8 14 25 9 10 1 8 10 21 9 4 11 15 19 13 25 15 12 318