Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0555 ATGGCTTCTCGTTTCTGGACCCAGGGTGGCAGTGGTAGTGATACTGAAGCGGATGAGAGTGAATATGATGAGGAGATTGATGACACAATTGATAAAAACCAAACTAATAGAAGCAGATACCTGGAAGAGAATGCCAGTGACAGTGATGATTCTGGCGACCAAAAGCGTATTGTCAGGTCGGCTAAAGACAAGCGTTTTGAGGAGATGTCTGCTACTGTGGATCAGATGAAAAATGCAATGAAGATCAATGACTGGGTTAGCCTGCAGGAGAGTTTTGATAAGATAAATAAGCAGCTTGAGAAAGTCATGCGTGTCACCGAGTCTGAGAAGGTTCCACCTCTTTATATCAAAGCACTTGTGATGCTAGAGGACTTCCTAAATCAAGCCATGGCTAATAAGGAAGCTAAGAAGAAAATGAGTACTAGCAATGCTAAGGCCTTGAATTCAATGAAACAGAAGCTGAAGAAGAACAATAAGCAATATGAAGAGTTAATTACTAAGTATAGGGAGAATCCTGAGATTGAGGAAGAAAAAGAGGAGGAGGAGGAGACAGAGGAGGAGGAGGAGGATGATGATTCTGAAATTGAGGATCCTTCTAAAATCATGTCAGGTTCAGAAGATGAAGAAGAAGATGACGACGATCATGAGGATGACCCGGATCATGGTGGTGGTGCATGGGTGAAAAAGATGAGCAAAAAAGATAAGCTCATGGATAAGCAGTTTATGAAGGATCCTAGTGGGATCACATGGGATACTGTCAACAAGAAATTTAAAGAGGTTGTAGCTGCTCGCGGTAGGAAGGGAACTGGAAGATTTGAGCAGGTTGAGCAGCTTACCTTCTTAACAAAAGTTGCTAAGACCCCTGCACAGAAGCTTGAGATTTTGTTCAGTGTTATATCTGCCCAATTTGATGTAAATCCTGGTCTCAGTGGGCACATGCCTATCAATGTGTGGAAGAAGTGTGTGCAAAATATGCTTTCTATAATCGACATTCTTGTACAGAATTCTAACATCATGGTGGATGATATGGTTGAACCTGATGAAAATGAGAGCCAGAAGCCAGTGGACTATAAGGGCACAATTCGTGTTTGGGGAAACTTGGTTGCTTTTGTTGAGAGGATAGACACTGAGTTTTTTAAGAGTTTGCAGTGTATTGATCCACATACACGTGAGTATGTTGAAAGACTTAGAGATGAGCCAATGTTTATGGTTCTCGCCCAAAATGTTCAAGAATATTTGGAACGAGTTGGGGATTACAAAGCAGCTTCAAAAGTTGCCTTAAGGCGTGTTGAATTAATCTATTACAAACCACAAGGGGTCTATGATGCCATGAGAAAGCTTGCAGAGCTGTCAGAAGATGGAGATGGTGGAGATGCAAGTGAGGAGGCTAAAGTAGTAGAAGAGAGTAGGGGCCCTGCGGCATTTATTGTTACTCCGGAGATCGTACCTCGCAAACCCACCTTTCCAGAGAGTAGTAGGGGGTTTATGGACATTCTGGTGACCCTCATATACCAATATGGAGATGAGCGGACTAAAGCACGAGCTATGCTCTGTGATATCTATCACCATGCTCTCTTGGATGAATTTTATATTTCTCGCGACTTGTTACTGATGAGTCATTTACAAGATAGTATTCAACACTTGGACATTTCAACACAGATCCTTTTCAACAGGGCAATGGCTCAACTTGGTCTATGTGGATTTCGGGTTGGCTTGATAAATGAAGGGCATGGCTGCCTTTCAGAATTATATTCTGGTGGAAGGGTGAAGGAATTGCTTGCACAAGGAGTCTCACAAAGCCGATATCACGAAAAGACTCCAGAACAGGAAAGGCTTGAAAGAAGAAGGCAGATGCCTTACCACATGCACATAAATCTTGAGCTCCTGGAGGCTGTGCATTTAATATGTGCTATGCTGCTGGAAGTTCCCAACATGGCAGGCAATGTTCATGATGCAAAGCGCAAGGTTATTAGTAAGAACTTTAGACGGTTACTCGAGGTGAGTGAGAGACAAACGTTCACTGGTCCTCCTGAGAATGTCAGAGATCATGTAATGGCTGCTACCCGAGCCCTTCGCAAGGGTGATTTCCAGAAGGCTTTCGATGTCATTGCATCACTAGATGTATGGAAACTACTTAGAAATCGTGATGAAGTGCTGGAAATGGTTAAAGGAAAGATCAAGGAAGAGGCTTTGAGGACTTACCTTCTCACATACTCTTCTTCTTACGATTCTCTGAGTTCAGACCATCTCACCCGAATGTTTGACCTTGCAGAGGGTCAAACACACAGTATTGTTAGCAAGATGATGATCAATGAGGAGCTTCATGCAAGTTGGGATCAGCCTAGTGGGTGTGTTATCTTCCACGACGTTAAGCACACCCGGTTACAGGGCCTGGCATTCCAGTTGGCAGATAAGCTGTCAATCCTTGCTGAAACTAATGAGAGGGCAGTGGAGGCGAGAATTGGAGGAGGAGGATTAGATTTACCCATGAGGAGAAGAGACAACCAAGAATATGCTTCTGGAGCTGGAGGCGGGGGTAGCAGGTGGCCGGACAACACTTATAATCATGGCAGGCAAGGTGGTGGTAGTTCGCGGGCAGGATATAGCAGCGGAGGGCGAGGCCAAGGCGGGGTTGGTGGATATTCTAGAGACCACCGGACAGGGCAGTCACGAGGAGGCAATGCAGGGTACCAGAGCACCCGTTACCAAGATGCCGCATATGGATCGGGGAGGACTGCTTATCAGTCTGGTTCTGTTAGAGGATCCCAGATGGATGCTTCAGCTCGTATGGTCAGCCTCAACAAAGGGGTTCATGCTTAA 2820 44.79 MASRFWTQGGSGSDTEADESEYDEEIDDTIDKNQTNRSRYLEENASDSDDSGDQKRIVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPPLYIKALVMLEDFLNQAMANKEAKKKMSTSNAKALNSMKQKLKKNNKQYEELITKYRENPEIEEEKEEEEETEEEEEDDDSEIEDPSKIMSGSEDEEEDDDDHEDDPDHGGGAWVKKMSKKDKLMDKQFMKDPSGITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVISAQFDVNPGLSGHMPINVWKKCVQNMLSIIDILVQNSNIMVDDMVEPDENESQKPVDYKGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQEYLERVGDYKAASKVALRRVELIYYKPQGVYDAMRKLAELSEDGDGGDASEEAKVVEESRGPAAFIVTPEIVPRKPTFPESSRGFMDILVTLIYQYGDERTKARAMLCDIYHHALLDEFYISRDLLLMSHLQDSIQHLDISTQILFNRAMAQLGLCGFRVGLINEGHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAGNVHDAKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAFDVIASLDVWKLLRNRDEVLEMVKGKIKEEALRTYLLTYSSSYDSLSSDHLTRMFDLAEGQTHSIVSKMMINEELHASWDQPSGCVIFHDVKHTRLQGLAFQLADKLSILAETNERAVEARIGGGGLDLPMRRRDNQEYASGAGGGGSRWPDNTYNHGRQGGGSSRAGYSSGGRGQGGVGGYSRDHRTGQSRGGNAGYQSTRYQDAAYGSGRTAYQSGSVRGSQMDASARMVSLNKGVHA 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3650992 3655244 + MC10g0452 Mch10g0555 677648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0555 939 MobiDBLite consensus disorder prediction 203 218 - -
Mch10g0555 939 SUPERFAMILY Winged helix DNA-binding domain 716 792 IPR036390 -
Mch10g0555 939 MobiDBLite consensus disorder prediction 136 154 - -
Mch10g0555 939 MobiDBLite consensus disorder prediction 852 870 - -
Mch10g0555 939 ProSiteProfiles PCI domain profile. 620 792 IPR000717 -
Mch10g0555 939 MobiDBLite consensus disorder prediction 1 56 - -
Mch10g0555 939 MobiDBLite consensus disorder prediction 828 900 - -
Mch10g0555 939 MobiDBLite consensus disorder prediction 1 15 - -
Mch10g0555 939 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 652 IPR008905 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Mch10g0555 939 Pfam PCI domain 717 789 IPR000717 -
Mch10g0555 939 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 884 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0006413(PANTHER)|GO:0031369(PANTHER)|GO:0031369(InterPro)
Mch10g0555 939 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 867 IPR027516 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Mch10g0555 939 Coils Coil 144 194 - -
Mch10g0555 939 MobiDBLite consensus disorder prediction 155 174 - -
Mch10g0555 939 MobiDBLite consensus disorder prediction 29 56 - -
Mch10g0555 939 MobiDBLite consensus disorder prediction 175 196 - -
Mch10g0555 939 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 721 809 IPR000717 -
Mch10g0555 939 MobiDBLite consensus disorder prediction 136 229 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0555 K03252 - csv:101203990 1551.18