Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0559 TTTTTGGGCTTTGTTTTGATCTTCTTCTCTCTCGCCTGCTGTTTCTCGCCCTCCTATGGATATGATTCATTGGATCCTCATGCCAACATTACTATCACATGGGATTTCTTGGTGGAAAATGGGGATACTTATGATGTGAGGGTTTCAATATACAATTTCCAATTGTTTCGCCATGTGGAGCTGCCTGGTTGGAAACTTGGCTGGTCATGGAAAGGTGATGAGGTTATATGGGGTATGTGGGGGGCAGAGGCTACACAGCAAGGAAATTGCTCCAAATACATAGGCAGAGAACTTCCTCATTGTTGTGAGAAGGAGCCTGTGATTGTTGATCTTATGCCTGGAGCTCCTTATAAGTTGCAGGTGGCCAATTGTTGTAGAGGAGGTGTGCTATCCTCCATGAAACAAGACCCTACCAACTATGGAGCTGCCTTCCAAATGAATGTTGGGAAGTCTGCTGGAAAAGATGTAGATGGCAAAATGCCTGAAAATTTCACTATGGGGCTTCCTGGATACACTTGTGGTGACCCATTTCAAGTCTCCCCAACCAAATTCAGTAAGGATGGCGGTCGTCGGTGGACACAAGTTCTAGAAACATGGAATGTGACCTGCGTTTACTCCCAATTTCGATCGTCACCAGCACCGGGTTGCTGTGTTTCACTGTCTTCCTTCTACAACAGCACCATTGTTCCTTGCCCTCAGTGCAGTTGTGGTTGCCAAGGGCTAGCGGGAACAAAATGTGTCAAGCCAGGCGAAACTCCTTCAGTTTTGCAACTTCCACATGAACATCACACTTCAGAAGTAGAACCATTGGTGAGGTGTTCACAACACATGTGCCCAATAAGGGTACATTGGCATGTGAAACAGAGTTATACACAGTATTGGAGAGTAAAGATCACAATCACAAATCTAAATTTTGCTAAGAATTACTCTCAATGGAACTTAGTAGTGATGCATCCCAACTTGAGAAATGTGACTCAGGTTTTCAGCTTCAACTACAGCCCCCTCAATCAGTATGGTAACATCAATGATACAGGGATGTTTTGGGGGATACACTTCTACAATGACTTGTTACTCACATCAGGAGACACAGGGAATGTTCAATCAGAGATGCTTCTTAGAAAAGATTCAGAAATTTTCACTTTCAGGGAAGGATGGGCATTCCCAAGAAGAATTTTATTCAATGGGGATGAGTGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATAAAGCTCACAAGGCCATGGCAGCATCCTATATAGTTTTCTTATTCCTGTTGCTCTCTGTTTCGTTATAA 1302 43.86 FLGFVLIFFSLACCFSPSYGYDSLDPHANITITWDFLVENGDTYDVRVSIYNFQLFRHVELPGWKLGWSWKGDEVIWGMWGAEATQQGNCSKYIGRELPHCCEKEPVIVDLMPGAPYKLQVANCCRGGVLSSMKQDPTNYGAAFQMNVGKSAGKDVDGKMPENFTMGLPGYTCGDPFQVSPTKFSKDGGRRWTQVLETWNVTCVYSQFRSSPAPGCCVSLSSFYNSTIVPCPQCSCGCQGLAGTKCVKPGETPSVLQLPHEHHTSEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWNLVVMHPNLRNVTQVFSFNYSPLNQYGNINDTGMFWGIHFYNDLLLTSGDTGNVQSEMLLRKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNKAHKAMAASYIVFLFLLLSVSL 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3682068 3685859 - MC10g0455 Mch10g0559 677652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0559 433 PIRSF COBRA 1 433 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Mch10g0559 433 PANTHER PROTEIN COBRA 9 428 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Mch10g0559 433 Pfam COBRA-like protein 44 206 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Mch10g0559 433 SUPERFAMILY Carbohydrate-binding domain 28 90 IPR008965 GO:0030246(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0559 Mch-Chr10:3682068 Mch8g2362 Mch-Chr8:26761020 3.14E-171 dispersed
Mch10g0559 Mch-Chr10:3682068 Mch6g0305 Mch-Chr6:2022687 3.25E-172 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0559 - - - 0.0