Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0559 TTTTTGGGCTTTGTTTTGATCTTCTTCTCTCTCGCCTGCTGTTTCTCGCCCTCCTATGGATATGATTCATTGGATCCTCATGCCAACATTACTATCACATGGGATTTCTTGGTGGAAAATGGGGATACTTATGATGTGAGGGTTTCAATATACAATTTCCAATTGTTTCGCCATGTGGAGCTGCCTGGTTGGAAACTTGGCTGGTCATGGAAAGGTGATGAGGTTATATGGGGTATGTGGGGGGCAGAGGCTACACAGCAAGGAAATTGCTCCAAATACATAGGCAGAGAACTTCCTCATTGTTGTGAGAAGGAGCCTGTGATTGTTGATCTTATGCCTGGAGCTCCTTATAAGTTGCAGGTGGCCAATTGTTGTAGAGGAGGTGTGCTATCCTCCATGAAACAAGACCCTACCAACTATGGAGCTGCCTTCCAAATGAATGTTGGGAAGTCTGCTGGAAAAGATGTAGATGGCAAAATGCCTGAAAATTTCACTATGGGGCTTCCTGGATACACTTGTGGTGACCCATTTCAAGTCTCCCCAACCAAATTCAGTAAGGATGGCGGTCGTCGGTGGACACAAGTTCTAGAAACATGGAATGTGACCTGCGTTTACTCCCAATTTCGATCGTCACCAGCACCGGGTTGCTGTGTTTCACTGTCTTCCTTCTACAACAGCACCATTGTTCCTTGCCCTCAGTGCAGTTGTGGTTGCCAAGGGCTAGCGGGAACAAAATGTGTCAAGCCAGGCGAAACTCCTTCAGTTTTGCAACTTCCACATGAACATCACACTTCAGAAGTAGAACCATTGGTGAGGTGTTCACAACACATGTGCCCAATAAGGGTACATTGGCATGTGAAACAGAGTTATACACAGTATTGGAGAGTAAAGATCACAATCACAAATCTAAATTTTGCTAAGAATTACTCTCAATGGAACTTAGTAGTGATGCATCCCAACTTGAGAAATGTGACTCAGGTTTTCAGCTTCAACTACAGCCCCCTCAATCAGTATGGTAACATCAATGATACAGGGATGTTTTGGGGGATACACTTCTACAATGACTTGTTACTCACATCAGGAGACACAGGGAATGTTCAATCAGAGATGCTTCTTAGAAAAGATTCAGAAATTTTCACTTTCAGGGAAGGATGGGCATTCCCAAGAAGAATTTTATTCAATGGGGATGAGTGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATAAAGCTCACAAGGCCATGGCAGCATCCTATATAGTTTTCTTATTCCTGTTGCTCTCTGTTTCGTTATAA 1302 43.86 FLGFVLIFFSLACCFSPSYGYDSLDPHANITITWDFLVENGDTYDVRVSIYNFQLFRHVELPGWKLGWSWKGDEVIWGMWGAEATQQGNCSKYIGRELPHCCEKEPVIVDLMPGAPYKLQVANCCRGGVLSSMKQDPTNYGAAFQMNVGKSAGKDVDGKMPENFTMGLPGYTCGDPFQVSPTKFSKDGGRRWTQVLETWNVTCVYSQFRSSPAPGCCVSLSSFYNSTIVPCPQCSCGCQGLAGTKCVKPGETPSVLQLPHEHHTSEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWNLVVMHPNLRNVTQVFSFNYSPLNQYGNINDTGMFWGIHFYNDLLLTSGDTGNVQSEMLLRKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNKAHKAMAASYIVFLFLLLSVSL 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3682068 3685859 - MC10g0455 Mch10g0559 677652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0559 433 PIRSF COBRA 1 433 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Mch10g0559 433 PANTHER PROTEIN COBRA 9 428 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Mch10g0559 433 Pfam COBRA-like protein 44 206 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Mch10g0559 433 SUPERFAMILY Carbohydrate-binding domain 28 90 IPR008965 GO:0030246(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0559 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0559 Mch-Chr10:3682068 Mch8g2362 Mch-Chr8:26761020 3.14E-171 dispersed
Mch10g0559 Mch-Chr10:3682068 Mch6g0305 Mch-Chr6:2022687 3.25E-172 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1128 . . . . . . . . . . . . . . Sed04g1592 Cpe01g00487 . Bhi01g01581 Tan01g0795 Cmetu06g2325 . Hepe07g0518 Mch10g0559 . Cla05g01018 Cam05g1111 Cec05g1122 Cco05g1112 Clacu05g1104 Cmu05g1053 Cre05g1127 Cone3ag0918 . . . . Csa03g01928 . Cme06g01212 Blo06g00983 . . . . . Bma05g00929 . . Cmo04g00577 . . . . . . . . . . . . . . . . . . . . . Lsi05g00155 . Chy06g01144 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g0305 . 48 448 COBRA Gene Family AT5G60920 79.7 5.7e-210 726.9
Mch8g2362 . 52 450 COBRA Gene Family AT5G60920 76.2 1.8e-200 695.3
Mch8g2363 . 111 507 COBRA Gene Family AT5G60920 68.3 4.0e-179 624.4
Mch6g0306 . 55 450 COBRA Gene Family AT5G60920 68.1 5.4e-176 614.0
Mch10g0559 . 32 429 COBRA Gene Family AT5G60920 54.2 6.2e-132 467.6
Mch4g2378 . 85 385 COBRA Gene Family AT5G60920 53.2 5.7e-117 417.9
Mch3g1681 . 22 230 COBRA Gene Family AT5G60920 67.0 4.7e-87 318.5
Mch6g0305 . 18 448 COBRA Gene Family AT3G02210 73.4 3.2e-206 714.5
Mch8g2362 . 31 456 COBRA Gene Family AT3G02210 74.2 1.8e-201 698.7
Mch8g2363 . 84 509 COBRA Gene Family AT3G02210 66.5 4.0e-180 627.9
Mch6g0306 . 27 454 COBRA Gene Family AT3G02210 65.8 1.1e-177 619.8
Mch10g0559 . 3 429 COBRA Gene Family AT3G02210 54.5 5.6e-142 501.1
Mch4g2378 . 71 385 COBRA Gene Family AT3G02210 54.1 4.5e-123 438.3
Mch3g1681 . 10 234 COBRA Gene Family AT3G02210 64.4 5.0e-90 328.6
Mch6g0305 . 18 453 COBRA Gene Family AT3G29810 74.7 1.7e-204 708.8
Mch8g2362 . 40 456 COBRA Gene Family AT3G29810 72.4 1.6e-194 675.6
Mch8g2363 . 94 508 COBRA Gene Family AT3G29810 65.6 1.7e-175 612.5
Mch6g0306 . 38 448 COBRA Gene Family AT3G29810 66.1 9.2e-174 606.7
Mch10g0559 . 15 431 COBRA Gene Family AT3G29810 56.3 6.1e-141 497.7
Mch4g2378 . 72 385 COBRA Gene Family AT3G29810 56.4 9.4e-126 447.2
Mch3g1681 . 3 234 COBRA Gene Family AT3G29810 62.1 1.5e-91 333.6
Mch8g2363 . 80 419 COBRA Gene Family AT5G15630 82.4 1.6e-178 622.1
Mch6g0306 . 32 363 COBRA Gene Family AT5G15630 83.4 3.1e-177 617.8
Mch6g0305 . 31 360 COBRA Gene Family AT5G15630 72.4 2.5e-150 528.5
Mch8g2362 . 38 366 COBRA Gene Family AT5G15630 68.1 1.2e-144 509.6
Mch3g1681 . 10 243 COBRA Gene Family AT5G15630 67.1 2.6e-99 359.0
Mch10g0559 . 20 342 COBRA Gene Family AT5G15630 50.6 1.4e-97 353.2
Mch6g0305 . 18 224 COBRA Gene Family AT5G60950 58.2 1.9e-65 245.7
Mch8g2362 . 48 228 COBRA Gene Family AT5G60950 60.2 2.0e-62 235.7
Mch8g2363 . 107 287 COBRA Gene Family AT5G60950 58.0 5.1e-58 221.1
Mch6g0306 . 51 231 COBRA Gene Family AT5G60950 56.9 4.3e-57 218.0
Mch10g0559 . 16 416 COBRA Gene Family AT1G09790 61.0 2.9e-151 531.9
Mch6g0306 . 41 434 COBRA Gene Family AT1G09790 53.7 6.7e-132 467.6
Mch6g0305 . 34 431 COBRA Gene Family AT1G09790 53.7 1.5e-131 466.5
Mch8g2362 . 40 436 COBRA Gene Family AT1G09790 53.5 2.6e-131 465.7
Mch8g2363 . 83 490 COBRA Gene Family AT1G09790 51.3 4.8e-130 461.5
Mch5g0748 . 35 647 COBRA Gene Family AT4G16120 66.4 3.8e-256 880.9
Mch10g1227 . 53 650 COBRA Gene Family AT4G16120 53.2 4.7e-198 688.0
Mch5g0748 . 15 653 COBRA Gene Family AT3G16860 61.7 4.5e-241 830.9
Mch10g1227 . 53 656 COBRA Gene Family AT3G16860 52.2 4.7e-190 661.4
Mch5g0748 . 30 634 COBRA Gene Family AT5G49270 63.7 4.1e-242 834.3
Mch10g1227 . 55 651 COBRA Gene Family AT5G49270 51.1 1.8e-189 659.4
Mch10g1227 . 53 669 COBRA Gene Family AT3G20580 64.7 3.3e-247 851.3
Mch5g0748 . 28 655 COBRA Gene Family AT3G20580 53.5 3.0e-208 721.8
Mch10g1227 . 57 674 COBRA Gene Family AT4G27110 61.6 3.6e-230 794.7
Mch5g0748 . 29 649 COBRA Gene Family AT4G27110 51.8 1.5e-199 693.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010841 0 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32