Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0565 TGTGTCGAGAGTGAGAGACAAGCGCTCTTATCCTTCAAGCAAGGACTCATGGACGAATATAATATACTCTCTTCTTGGGAAACACGAGTCAATAATGATTGCTGCAATTGGAGAGGTGTTCGATGCAGCAACAAAACTGAAGGTTATCATGTCATTGGGATTGATCTTCGTGGCTCATATGATAAGTTTTTGATGGGTGAGGTTGGTTCTTCTTTAACTCAATTGTCACACCTCAACTACGTAGATCTTAGTCATAACATTTTCCAACGTTTTGATCTCCTCAAGGATATTGGTTCTCTTATCAATTTGAATTATCTCAACCTGTCCTATAACTGGTTTGCAACAGCCCTTCCTCTCCATCTTGGGAACCTTTCAAAATTATCGGTTCTTGATCTCAGATCAAATAGTTGGTTAAACAGTAATCTTAGATGGCTCTCAAGTCTTTCGTCCTTAACACATCTCGATTTGAGTTTCGGAGACTTTCACGGTGCTAATGACTGGGTAGGCATCATTAACAAGCTTCCTCTTTTACAAAGTTTGTCGCTAAGTAATTGTAACCTCCCACCACCTATTTTACCATCTTATTCATACACCAATTTCTCTAGATTTCTACTTCAGTTGGACCTCTCTTCCAATTATAATCTCAATTCTTCGAATTATCACTCATGGTTGATCAACCTTACCAGTCTCGTCCATTTGAATCTCGAAGCCAACAATTTGGAAGGTTTGAACTTTGATGATTTTGGAAATATGACTTCTCTTGTATCTCTTCGTCTTGCTTCCACTAAAGTTAATTTCCGTTCTCTTAAGTCCTTTAAAAGTCTTCTTAATTTAAATTCATTAGACTTATATGACAATAGTATAGGAGGATCGCTATCTGATTTTCTAGAAGCCTTTCACCCACGCGTACTTAACTCATTACAATATTTAAACCTTGCGAGTAACAAATTTCTTGGATTCTTGCCAAATTTTACGATGCTTCCATCTTTGAAACATTTAGAACTATCTGACAACGTGTTGAATGGAACAATCCCCAAAAATTTGGGACAATTATCAAACTTGGAGTACTTAGATCTTGGTTCTAATCCATTGGAGGGTGAAGTTTCGGAAACTCATTTTTCAAAGCTTACAAATTTAAAAGAATTGGATCTATCTAATACTTCTTTGCATTTAAACTTCAAGAGTGATTGGGTTCCTTCTTTTCAATTGGATTCCATCAATTTGGGACATTGCAAATTGGGCCCATTTTTTCCCAAGTGGCTTCGAACACAAAATTTGTCCCAAATTGATATTTCATTTGGTCAAATTTCAGACATCATTCCTCGTTGGTTTTGGAATAACTTGTCTCCAGAATTGAATGTTCTGAATCTTGCTGGGAATAAAATGATGGGTGAAATTCCGAATTTGTCACTGGAGTTCAAAAGAGCACCTGATATCAGTTTACATTCAAACAAATTTGTTGGGTCAATTCCTGCCTTCCTCTTTGGAGCTCAATTCCTCTTTCTTTCAAGTAATGATTTTTCAGACTTAAGTTGCTTATGTGAAATTGTCAACTCTCCTCTGTTGATTTTGGATCTCTCTGACAACCAATTGTCAGGACAACTTCCTAATTGTTGGAATTCCATGCTTAATTTAGGCGTGTTAAATTTGTCAAGTAATTATTTTTATGGAGAGATTCCACGTTATTCTTGGAGTAATCTCTTTAGTTTGAGTTCCTTAATTATACGTAACAACCAGTTTTCGGGAGGGTTAAGTTTTTTGATCAAATTGACGTCTTTGAAATTTGTCGATGCAATGAATAATAATTTATCTGGAACAATACCATCGTGGATTGGATCACAATTACCCTATTTGACTCTGCTGAATTTGAGGTCGAATCACTTCCATGGAAACTTACCTTTAGGTATTTGCAACCTCACGAATATTGAAGTATTGGACATTTCATCCAATAATGTTTCTGGGAGCATACCAACTTGTATTGGTAATTTCAATGTCTTGACACAAACATCAAACGGAAGTGGCTATCTATTTTCTTCTTATAAAGAGGATGATTATGTCCTGACGTGGAAGGGTCAAGAGAGACTCGTTACAGGACAAGTAATGGAATTTGAAAGGAGCATCGATTTATCTTGCAATCATTTGAGTGGAAAAATTCCTAATGAAATCACTAAGCTTGTTGGTTTGATTACTTTGAATCTTTCGATGAATGAATTAACAGGTCAAATTCCAGACAAAATGGGTGAACTTCAATCATTGGAATCCCTGGATCTATCGAGAAATTATTTGTCTGGTCCAATTCCATCTAGTTTTTCTCAAATATCAAGGTTGGGAGTATTGAAGCTGTCGTACAATAATCTTTCGGGAAAAATTCCTACAGGAACTCAACTTCAAGGCTTTTCAACTTCTTCTTACGAAGGCAACCCTTATCTTTGCGGAGATCCACTGAAAAAATGCTTTAAAGAAATCACTCAAGATCCAAGCAGCAACAACAATGTTCATGTTGGGAATGAAAATGAAAATGAAGACAAATTATTTGTACGAGAATTTATGATCAGCATGTTGTTTGGATTTATTGTGGGTTTTTGGGGAATATTTGGCAGTTTGGTACTTAATAGAAGATGGAGACATGCATACTTCAAATTT 2643 36.1 CVESERQALLSFKQGLMDEYNILSSWETRVNNDCCNWRGVRCSNKTEGYHVIGIDLRGSYDKFLMGEVGSSLTQLSHLNYVDLSHNIFQRFDLLKDIGSLINLNYLNLSYNWFATALPLHLGNLSKLSVLDLRSNSWLNSNLRWLSSLSSLTHLDLSFGDFHGANDWVGIINKLPLLQSLSLSNCNLPPPILPSYSYTNFSRFLLQLDLSSNYNLNSSNYHSWLINLTSLVHLNLEANNLEGLNFDDFGNMTSLVSLRLASTKVNFRSLKSFKSLLNLNSLDLYDNSIGGSLSDFLEAFHPRVLNSLQYLNLASNKFLGFLPNFTMLPSLKHLELSDNVLNGTIPKNLGQLSNLEYLDLGSNPLEGEVSETHFSKLTNLKELDLSNTSLHLNFKSDWVPSFQLDSINLGHCKLGPFFPKWLRTQNLSQIDISFGQISDIIPRWFWNNLSPELNVLNLAGNKMMGEIPNLSLEFKRAPDISLHSNKFVGSIPAFLFGAQFLFLSSNDFSDLSCLCEIVNSPLLILDLSDNQLSGQLPNCWNSMLNLGVLNLSSNYFYGEIPRYSWSNLFSLSSLIIRNNQFSGGLSFLIKLTSLKFVDAMNNNLSGTIPSWIGSQLPYLTLLNLRSNHFHGNLPLGICNLTNIEVLDISSNNVSGSIPTCIGNFNVLTQTSNGSGYLFSSYKEDDYVLTWKGQERLVTGQVMEFERSIDLSCNHLSGKIPNEITKLVGLITLNLSMNELTGQIPDKMGELQSLESLDLSRNYLSGPIPSSFSQISRLGVLKLSYNNLSGKIPTGTQLQGFSTSSYEGNPYLCGDPLKKCFKEITQDPSSNNNVHVGNENENEDKLFVREFMISMLFGFIVGFWGIFGSLVLNRRWRHAYFKF 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3754147 3756789 + MC10g0461 Mch10g0565 677658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0565 881 FunFam Tyrosine-sulfated glycopeptide receptor 1 563 823 - -
Mch10g0565 881 SMART LRR_typ_2 639 663 IPR003591 -
Mch10g0565 881 SMART LRR_typ_2 304 326 IPR003591 -
Mch10g0565 881 SMART LRR_typ_2 100 124 IPR003591 -
Mch10g0565 881 SMART LRR_typ_2 749 772 IPR003591 -
Mch10g0565 881 SMART LRR_typ_2 376 395 IPR003591 -
Mch10g0565 881 SMART LRR_typ_2 327 351 IPR003591 -
Mch10g0565 881 SMART LRR_typ_2 542 566 IPR003591 -
Mch10g0565 881 SMART LRR_typ_2 227 250 IPR003591 -
Mch10g0565 881 SMART LRR_typ_2 174 199 IPR003591 -
Mch10g0565 881 Gene3D Ribonuclease Inhibitor 269 370 IPR032675 -
Mch10g0565 881 Gene3D Ribonuclease Inhibitor 1 166 IPR032675 -
Mch10g0565 881 Gene3D Ribonuclease Inhibitor 167 268 IPR032675 -
Mch10g0565 881 SMART LRR_sd22_2 275 297 - -
Mch10g0565 881 SMART LRR_sd22_2 749 775 - -
Mch10g0565 881 SMART LRR_sd22_2 227 245 - -
Mch10g0565 881 SMART LRR_sd22_2 639 665 - -
Mch10g0565 881 SMART LRR_sd22_2 351 381 - -
Mch10g0565 881 SMART LRR_sd22_2 327 350 - -
Mch10g0565 881 PANTHER LRR RECEPTOR-LIKE KINASE 305 879 IPR052938 -
Mch10g0565 881 Pfam Leucine rich repeat N-terminal domain 3 43 IPR013210 -
Mch10g0565 881 PRINTS Leucine-rich repeat signature 749 762 - -
Mch10g0565 881 PRINTS Leucine-rich repeat signature 521 534 - -
Mch10g0565 881 SUPERFAMILY L domain-like 32 212 - -
Mch10g0565 881 Pfam Leucine rich repeat 705 762 IPR001611 GO:0005515(InterPro)
Mch10g0565 881 Pfam Leucine rich repeat 306 364 IPR001611 GO:0005515(InterPro)
Mch10g0565 881 SUPERFAMILY L domain-like 496 816 - -
Mch10g0565 881 Pfam Leucine Rich Repeat 641 663 IPR001611 GO:0005515(InterPro)
Mch10g0565 881 Pfam Leucine Rich Repeat 521 541 IPR001611 GO:0005515(InterPro)
Mch10g0565 881 Gene3D Ribonuclease Inhibitor 371 822 IPR032675 -
Mch10g0565 881 FunFam LRR receptor-like serine/threonine-protein kinase GSO2 372 474 - -
Mch10g0565 881 SUPERFAMILY L domain-like 172 494 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0565 K13466 - - mdm:108172934 625.935
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0565 Mch-Chr10:3754147 Mch8g0918 Mch-Chr8:6561517 1.21E-49 dispersed
Mch10g0565 Mch-Chr10:3754147 Mch10g0566 Mch-Chr10:3762158 1.26E-129 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g829 . . . . . . . . . . . . . . . . . Bhi01g01547 . . . . Mch10g0565 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000631 0 9 0 0 0 3 1 3 2 3 2 1 1 1 2 1 1 9 1 0 2 3 3 8 11 1 2 4 3 9 86