Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0576 ATGGCGTGCGAAGGCAGCGGCAATGGAGGAGATGAGACGTCGACATTGTCGCCTAGAAACAGGCTCAAGTTTCTTTGCAGTTATGGCGGCAAGATCCTCCCTAGGCCCACCGATGGCCACCTCAAGTATGTCGGCGGCGAGACTCGCGTCATCGCTATTCCGCGCGATATCAAATTTTCAGATCTATTGAAGAAACTGACTGCTCTATTTGATGGAGACATGGTTCTAAAGTATCAGTTGGTTCCTGAGGACCTTGATGTTTTGGTGTCTGTGAGGTCTGATGAGGATTTAAAGCATATGCTTGATGAATATGATCGTCTCGAAAGCGAAGGAACGCCTAAACTTCGGTGTTTCTTATTTCCTTCAAACCCCATTGTTGTTGAGACGCAACCATTCTCAACAGAGCCTCAAGCGATTGAGCAACGTTATCTCGAAGCAATTAATGGCATCGTACGCTCCAGCTCCACCGCCAGCTCAAGACTCTCCCCTACCCGTGCTAACAGTAACCGCCCTACATTCAGCATTTCCTCTGCCTGCTCATCCCCAAAATCATCTTCTCCAGATGGTCATACTGCTGAATCAATGGCTCAAGAAACATTCTCTTGGAATAGCATCAAACCTAGCCTCCCTCCTATGCATAAGGTCCATAGCTCTCCTAGCCTTTGCAGCATCAACAACGTCCAACCTCCCGCCACCGTCTTTCCCGGTAGCAAACATCACATTCAGCAGCGTCATTACCACTATCAACAAAACCAGATGCAGCAGCATCACAATGGCTACCAGTCTCAAAGACTTCCACCAGACTTTAACAGAAGTAATGCCCCCGAAAGAGTTCCGATGACCCTTTCGCCATCGCCACCTATGGGTAGAGTTGACGTTGGAAGGAGTCCAATGGGTCCTAATGTTAGCCACCATTCATCTGGTAGACAGCAGAGAGGAATTGGAGTCTGGAACAAATATGGATACTCTGATGAGTTTGCAGTGAATGGTTGTGGTAGGATCGATAGAACAGAGAGTAATCAATGGAGCTCGAGAAAGACGGTCTGGGAGTAA 1053 48.05 MACEGSGNGGDETSTLSPRNRLKFLCSYGGKILPRPTDGHLKYVGGETRVIAIPRDIKFSDLLKKLTALFDGDMVLKYQLVPEDLDVLVSVRSDEDLKHMLDEYDRLESEGTPKLRCFLFPSNPIVVETQPFSTEPQAIEQRYLEAINGIVRSSSTASSRLSPTRANSNRPTFSISSACSSPKSSSPDGHTAESMAQETFSWNSIKPSLPPMHKVHSSPSLCSINNVQPPATVFPGSKHHIQQRHYHYQQNQMQQHHNGYQSQRLPPDFNRSNAPERVPMTLSPSPPMGRVDVGRSPMGPNVSHHSSGRQQRGIGVWNKYGYSDEFAVNGCGRIDRTESNQWSSRKTVWE 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3843020 3845490 + MC10g0472 Mch10g0576 677669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0576 350 Gene3D - 42 121 - -
Mch10g0576 350 PANTHER OS05G0427100 PROTEIN-RELATED 13 267 IPR053198 -
Mch10g0576 350 Pfam PB1 domain 38 120 IPR000270 GO:0005515(InterPro)
Mch10g0576 350 SUPERFAMILY CAD & PB1 domains 38 125 - -
Mch10g0576 350 CDD PB1_UP2 25 120 - -
Mch10g0576 350 SMART PB1_new 36 122 IPR000270 GO:0005515(InterPro)
Mch10g0576 350 MobiDBLite consensus disorder prediction 155 197 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0576 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0576 Mch-Chr10:3843020 Mch5g0173 Mch-Chr5:1110990 8.46E-32 dispersed
Mch10g0576 Mch-Chr10:3843020 Mch6g0657 Mch-Chr6:4476262 1.31E-33 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1166 Blo02g01199 . . Bda08g00415 . . . . . . . . . . . Cpe01g00814 Cpe14g00671 . . . . . . . . . . . . . . . . . . . . . Cme06g02152 . . . . . . Bma05g00923 . . Cmo04g00961 Cmo16g00835 . . . . . . Bhi11g00738 . . . . Mch10g0576 . Cla10g00670 Cam10g0668 Cec10g0691 Cco10g0669 Clacu10g0690 Cmu10g1516 Cre10g0897 . Csa03g00645 Chy06g01678 .
Vvi16g1038 . . . . . . . . Cmo16g00053 . . . . Car15g00958 . . Cpe14g00037 Bhi01g01493 Tan01g0091 . . . Mch10g0576 . . . . . . . . Cone1ag0984 . . . . . . Cme06g01145 . . . . . . . . . . . . . Car16g00042 . . . Bhi12g00642 . . Lac11g0158 Hepe06g0792 . Lcy12g0135 Cla05g00972 Cam05g1063 Cec05g1069 Cco05g1062 Clacu05g1056 Cmu05g1007 Cre05g1084 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006688 1 1 2 1 0 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 37