Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0588 ATTATTGAGAATGATCTTTTCAAGCAAGACTGGAGGTCCAGAACAAAGATTGAGATATTTCAGTATATTATCCTCAAATGGACACTGTGCCTTCTCATTGGTTTATTTACAGGGCTTGTTGGATTTTCCAACAACATAGCTGTTGAGAATATTGCTGGTGTGAAACTTCTGATGACCAACAGTCTCATGCTCAAGCAAAAGTACTATCAGGCATTTGCAGTATATGTTGCTTCCAATGTTGTTTTAGCTGTTGCTGCTGCAGCCCTCTGTGCCTATATTGCTCCTGCTGCTGCAGGTTCTGGCATACCTGAGGTGAAAGCATACCTAAATGGTATAGATGCTTATTCTATATTGGCTCCAAGTACCTTATTTGTGAAGATTTTTGGTTCAATATTTGCTGTTGCTGGTGGATTTGTTGTGGGTAAGGAAGGACCCATGGTTCATACTGGTGCATGCATTGCCTCATTACTAGGACAAGGAGGTTCTCGCAAATACCGCTTGACTTGGAAGTGGCTCAGATACTTCAAAAATGATAGGGACAGGCGGGATTTGATCACCTGTGGTGCAGGAGCTGGTGTAGCAGCTGCCTTCCGTGCTCCAGTTGGTGGCGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTTCTCTTCTCTGGAGGACCTTTTTCACTACTGCTGTTGTAGCCGTTGTCTTGAGGGGTTTCATGGCAATTTGCCGAGGGGGAACATGTGGGTTATTTGGTGAAGGAGGTCTCATCATGTTCGACATCCATACAGAAAATTCCAATTATGGCACTCCAGATCTTATTGCAATTGTCTTACTTGGAGTTATTGGCGGTGTGTTCGGAAGCCTTTACAACTTCCTCGTGGATAAGGTCCTCCGAACCTACAGCATCATAAATGAGAGAGGTCCTGGATGGAAAGTTATCCTTGTTGTTGCCGTTTCCATATTGACAACCTGTGTCTCATTTGGTCTTCCTTGGCTCTCGCAATGTTTACCTTGCCCACCTGACTTGGACGATCAATGCCCAACCGTTGGTCGCTCGGGAAACTACAAGAACTTCCAATGCCCACCTGGCCATTACAATGATCTTGCTTCTTTATTTTTCACCACCAATGATGATGCCATCCGGAACCTGTTCACATCTGCTATTGACAAGCAATTTCAGCTCTCCTCACTTTTTATCTTCTTTGCTGCTATCTATTGTCTTGGCATTATTACTTATGGCATCGCTGTGCCCTCAGGGCTCTTCATACCAGTAATACTGGCAGGAGCTTCTTATGGTCGCATTGTAGGGAGATTATTTGGTTCGGTTGCTGATGCTGATCTTGATGTCAGTCTCTATGCCCTTCTTGGAGCTGCTTCATTTCTTGGTGGCACTATGAGAATGACTGTTTCCCTATGTGTCATACTCCTTGAGCTTACTAATAACCTTTTGATGCTCCCATTACTAATGCTTGTTCTTCTAATTTCAAAGACGGTGGCGGATTTTTTTAATAAAGGTGTCTATGATCAGATTGTGAAGATGAAGGGACTACCTTTTATGGAAGCCCATGCTGAACCATACATGAGGCAACTGATTGCTGGGGGCGTGGCTTCTGGTCCCTTAATTACACTCTCTGGGATCGAAAAGGTCGAAAACGTAATGCAAGCTTTGACAATGACAAACCACAATGGGTTTCCTGTAGTTGATGAACCGCCATTCTTGGACAGTTCAGAACTTTGCGGGCTTGTTCTGAGGTCTCATCTGCTTGTTTTGCTTAAAGGAAAAAAGTTTACAAAGCAAAGGGTGTCAATTAGATCAGGCATCATGGGAAGCTTCAAAGCACATGATTTTGCAAAAGCTGGTTCTGGCAAAGGGGTGAAACTGGAAGATTTGGACATTGACGAGGAGGAGATGGAAATGTTTGTTGATCTTCATCCCATTACAAATACGTCGCCCTACACCGTAGTAGAAACAATGTCGCTAGCTAAAGCAGCGATTCTCTTTCACGGGCTCGGCTTGAGACACTTGTTGGTAGTTCCAAAGACACCCGGGAGGCCTCCAATCACTGGAATCCTTACACGTCACGACTTCATGCCCGAGCATGTTCTAGGACTTTACCCCCACCTCAACCCCCACAAG 2133 44.68 IIENDLFKQDWRSRTKIEIFQYIILKWTLCLLIGLFTGLVGFSNNIAVENIAGVKLLMTNSLMLKQKYYQAFAVYVASNVVLAVAAAALCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAGAGVAAAFRAPVGGVLFALEEAASWWRSSLLWRTFFTTAVVAVVLRGFMAICRGGTCGLFGEGGLIMFDIHTENSNYGTPDLIAIVLLGVIGGVFGSLYNFLVDKVLRTYSIINERGPGWKVILVVAVSILTTCVSFGLPWLSQCLPCPPDLDDQCPTVGRSGNYKNFQCPPGHYNDLASLFFTTNDDAIRNLFTSAIDKQFQLSSLFIFFAAIYCLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVADADLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKTVADFFNKGVYDQIVKMKGLPFMEAHAEPYMRQLIAGGVASGPLITLSGIEKVENVMQALTMTNHNGFPVVDEPPFLDSSELCGLVLRSHLLVLLKGKKFTKQRVSIRSGIMGSFKAHDFAKAGSGKGVKLEDLDIDEEEMEMFVDLHPITNTSPYTVVETMSLAKAAILFHGLGLRHLLVVPKTPGRPPITGILTRHDFMPEHVLGLYPHLNPHK 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3914541 3919473 + MC10g0484 Mch10g0588 677681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0588 711 Gene3D - 519 701 IPR046342 -
Mch10g0588 711 FunFam Chloride channel ClC3 18 333 - -
Mch10g0588 711 Pfam Voltage gated chloride channel 83 499 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch10g0588 711 Pfam CBS domain 646 696 IPR000644 -
Mch10g0588 711 SUPERFAMILY CBS-domain pair 522 696 IPR046342 -
Mch10g0588 711 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 699 IPR051280 GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER)
Mch10g0588 711 CDD CBS_pair_voltage-gated_CLC_euk_bac 521 698 - -
Mch10g0588 711 Gene3D Clc chloride channel 18 518 - -
Mch10g0588 711 PRINTS Plant CLC chloride channel signature 225 235 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Mch10g0588 711 PRINTS Plant CLC chloride channel signature 367 383 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Mch10g0588 711 PRINTS Plant CLC chloride channel signature 243 250 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Mch10g0588 711 PRINTS Plant CLC chloride channel signature 211 219 IPR002251 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)
Mch10g0588 711 SUPERFAMILY Clc chloride channel 4 520 IPR014743 -
Mch10g0588 711 CDD ClC_6_like 1 518 - -
Mch10g0588 711 PRINTS Chloride channel signature 449 465 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch10g0588 711 PRINTS Chloride channel signature 467 486 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch10g0588 711 PRINTS Chloride channel signature 505 519 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch10g0588 711 PRINTS Chloride channel signature 126 145 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch10g0588 711 PRINTS Chloride channel signature 190 209 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch10g0588 711 PRINTS Chloride channel signature 95 112 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch10g0588 711 PRINTS Chloride channel signature 415 435 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0588 Mch-Chr10:3914541 Mch8g3054 Mch-Chr8:33032242 1.07E-303 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0588 K05016 - csv:101209987 1157.13