Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0597 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGAGGAGGTCTTCAGCGACTTTAAAGGCAGACGTGCCGGCTTGATCAAAGCCCTCACCGCTGATGTTGAGAAGTTCTACCAGCAGTGCGATCCTGAGAAGGAGAACCTGTGTCTCTATGGGCTTCCAAATGAGACGTGGGAAGTTAACTTACCTGTGGAGGAGGTGCCTCCTGAGCTGCCTGAACCAGCATTAGGTATAAACTTTGCTAGGGATGGGATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGATTCATGGCTGCTTGCTGTTGCATTCTATTTTGGTGCACGTTTTGGATTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAGTGGAAATGTTAAGCAATCAAAAGAACAGTCTGCCACTCATAACAATAGCAGCAAAAGCAAGTCGAGTGGGAAGATGTCCCGGCAATTGGTGGAACCCCATGGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGTGGGGAAGATGAAGAGGAAGAAGAAGATGATGAACAGGGCGCAACATGTGGGGCTTGTGGGGACAATTACGGCAACGACGAATTCTGGATTTGTTGTGATGCGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCGAAGGCTGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGA 771 47.73 MEGMPHPIPRTVEEVFSDFKGRRAGLIKALTADVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPSVFEVVSGNVKQSKEQSATHNNSSKSKSSGKMSRQLVEPHGKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDACERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4024756 4030557 - MC10g0493 Mch10g0597 677690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0597 256 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Mch10g0597 256 FunFam PHD finger alfin-like protein 195 251 - -
Mch10g0597 256 CDD PHD_AL_plant 203 252 IPR044104 -
Mch10g0597 256 SMART PHD_3 202 250 IPR001965 -
Mch10g0597 256 MobiDBLite consensus disorder prediction 143 202 - -
Mch10g0597 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 251 IPR013083 -
Mch10g0597 256 SUPERFAMILY FYVE/PHD zinc finger 191 253 IPR011011 -
Mch10g0597 256 Pfam PHD-finger 203 249 IPR019787 -
Mch10g0597 256 MobiDBLite consensus disorder prediction 184 201 - -
Mch10g0597 256 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
Mch10g0597 256 PANTHER CPG BINDING PROTEIN 9 255 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Mch10g0597 256 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Mch10g0597 256 MobiDBLite consensus disorder prediction 143 164 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0597 Mch-Chr10:4024756 Mch9g0232 Mch-Chr9:1738377 2.47E-118 dispersed
Mch10g0597 Mch-Chr10:4024756 Mch8g0546 Mch-Chr8:3936328 1.08E-123 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42445 PF12165 Alfin 6.60E-69 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0597 K26274 - csv:101212601 469.159