Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0606 ATGGTTATTGTCGGTTCTTTGCAACTGTCCTATCATCTGGGACCCTGGAGGAACCGTTTGTATGAAGAAAACCTTAAGTTTGCCACTCAGAGCAATAACATACGGTTATTGAGTGCAGCCAGTCCATCGCCTCGTTTATTTCAGCAGAAGAACACTTGGAGCACTCATTTATTTAGCATGAAGTACTCACCTAATTACACTGTACCTTTTAGATACAATGTATTTAGGTGCCACTCGTCATTGATGACAGACCAACCACTGGATCCTCCTGGGATTAAGGCAGCTGTAGTGGCTTTGACAAGGTTTTGTAATGTATTAGGTGGTTGTCCTCCTCCAGTGATTAAGTTGGTTCCTGCAGTTTGTATTATCATGTTTGCTGTATGGGGTCTTGGACCATTTTTGCGTTATACTAGAAGCCTACTCCTCCATGGGAGCGATAATAACTGGAAAAAAAGTCGCACGTATAAAGTCATGACCTTGTATCTTCAACCATTATTGCTATGGGCTGGAGTTGCACTTATTTGCAGAGCTTTGGATCCAGTAGTTTTACCTACAAAGCCTAGCCAAGTTGTGAAGCAACGTATATTAAATTTTGTTAGGTCGTTGTCCACGGTGCTGGCCTTTGCGTATTGCTTATCAAGTATGATTGAACAAGCTCAGAAGTTCTTCTCAGAGACCACCGAATCCAGTGACGCAAGAAATATGGGCTTTCAATTTGCTTGGAAGGCCGTATACTCTGCAGTATGGGTTGCTGCTGTCTCACTGTTCATGGAGCTCTTGGGCTTTTCTACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACTGTGTTGCTGACACTAGCTGGCCGTGAAATATTCACAAACTTCCTTTCAAGTGTGATGATCCATGCAACTCGTCCTTTCATAGTCAATGAATGGATTCAAACAAAGATTGAGGGCTATGAAGTTTCTGGCACGGTTGAGGTTTGTATGTTTGTGTTGAACCATGCACCTTTAGAAGTTTTAATGTCGTTAGAAACATCTTATATGAATGCAATAGACATTCAATATCGTTTCTATCAACTGCAGCATGTAGGATGGTGGTCGCCAACAATTATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATCAGTTTACCATTAACGTGGTTAGAAATCTGAGTCAAAAAACTCACTGGCGTATTAAAACCCACCTAGCCATCAGCCATTTGGACGTCAATAAAATCAATAATATTGTCGCTGACATGCGGAAAGTCTTGGCGAAGAACCCTCAAGTTGAACAACAGAGGTTGCATAGAAGAGTATTTTTGGAGAACGTGAATCCTGAAAACCAGGCACTTTTGATTTTGATATCCTGTTTTGTCAAGACTTCACACTTTGAAGAATACCTTTGTGTGAAGGAAGCTATAATCTTGGATCTACTTAGAGTCATTAGACATCACCGGGCTCGCCTCGCCACACCAATCCGCACAATGCAGAAGATGCATAGTGATTCGGACTTGGAAAGTGTTCCATTTTCTGATTCAATATTTGGTCGTGGTGGTGTGAATTTGAATCGCCGCATGCTAATGATCGAACCCCCATACAAAGTCTATGGAGAAGATAGAAAACAAAGCCACAGTAGGACGTCTCGCACAACTGGAGAACAAAATGGTAAGCCCATTGCACGGTCTTCGGGTGACAGCAAGGCAGCCAAAGAGGCAACACCATCTGACAGAAAGACAGAAGTCAGGACTGGAGAAGAAAAAGACTCTGATACAAAAAAGCATCCCAAAGTTCCAACGTCGATGTCTGATGATAATTCAAGTAATGAATCAAAACATAAGTCATCATCAAGATCTGCATCGAGTACAAACGGTATCTCTGGTATGCCTAGTTCTGATGCCAAAACAACTAGATCAGACACTGATAATTCATTTGAGGATCCTAGTACGAAGCAATCTGAAAATGGCTCGGGAAGTACCAAGCAGAACTACAAGTCTAACCATCCAGCTGTTTCCTTGCCGGAAGATGTTAAGAAAACAGGGGGAAGTTCAGCTACTTCACAGCCAAGGATAGAAGGTGAACAGACGCCAGTTTTAAAGCCATCAACATTGAAGCCTGGTGTTGAAGAGAACTTAATTCTTGGTGTTGCTTTGGATGGCTCTAAGAGAACCCTTCCTATTGAGGAGGACATGCCTTCTTCCCCTGAAACCGTGAAAGATTTGGCTGCACGCTGGAACGGGAATGGAACGAATGGGGCAACAACTCCGGATAAGGATACGAAAGATCAGACTCCACCTCCAAGTGAATAG 2301 42.85 MVIVGSLQLSYHLGPWRNRLYEENLKFATQSNNIRLLSAASPSPRLFQQKNTWSTHLFSMKYSPNYTVPFRYNVFRCHSSLMTDQPLDPPGIKAAVVALTRFCNVLGGCPPPVIKLVPAVCIIMFAVWGLGPFLRYTRSLLLHGSDNNWKKSRTYKVMTLYLQPLLLWAGVALICRALDPVVLPTKPSQVVKQRILNFVRSLSTVLAFAYCLSSMIEQAQKFFSETTESSDARNMGFQFAWKAVYSAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFIVNEWIQTKIEGYEVSGTVEVCMFVLNHAPLEVLMSLETSYMNAIDIQYRFYQLQHVGWWSPTIIRGEDREAVHIPNHQFTINVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHRARLATPIRTMQKMHSDSDLESVPFSDSIFGRGGVNLNRRMLMIEPPYKVYGEDRKQSHSRTSRTTGEQNGKPIARSSGDSKAAKEATPSDRKTEVRTGEEKDSDTKKHPKVPTSMSDDNSSNESKHKSSSRSASSTNGISGMPSSDAKTTRSDTDNSFEDPSTKQSENGSGSTKQNYKSNHPAVSLPEDVKKTGGSSATSQPRIEGEQTPVLKPSTLKPGVEENLILGVALDGSKRTLPIEEDMPSSPETVKDLAARWNGNGTNGATTPDKDTKDQTPPPSE 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4099653 4107553 - MC10g0502 Mch10g0606 677699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0606 766 MobiDBLite consensus disorder prediction 610 635 - -
Mch10g0606 766 Gene3D - 195 299 - -
Mch10g0606 766 MobiDBLite consensus disorder prediction 533 701 - -
Mch10g0606 766 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 321 IPR045042 -
Mch10g0606 766 MobiDBLite consensus disorder prediction 676 690 - -
Mch10g0606 766 MobiDBLite consensus disorder prediction 645 666 - -
Mch10g0606 766 MobiDBLite consensus disorder prediction 568 597 - -
Mch10g0606 766 MobiDBLite consensus disorder prediction 744 758 - -
Mch10g0606 766 MobiDBLite consensus disorder prediction 740 766 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0606 K22047 - - csv:101217250 1093.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0606 Mch-Chr10:4099653 Mch8g0272 Mch-Chr8:1854322 7.52E-230 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0406 . 154 520 Mechanosensitive Ion Channel Family AT4G00290 65.0 3.3e-143 505.4
Mch8g0272 . 11 702 Mechanosensitive Ion Channel Family AT5G10490 57.3 9.7e-199 690.3
Mch10g0606 . 64 764 Mechanosensitive Ion Channel Family AT5G10490 55.1 1.0e-192 670.2
Mch8g0272 . 11 682 Mechanosensitive Ion Channel Family AT1G58200 57.5 8.6e-195 677.2
Mch10g0606 . 49 731 Mechanosensitive Ion Channel Family AT1G58200 50.7 1.1e-170 597.0
Mch2g0398 . 50 942 Mechanosensitive Ion Channel Family AT1G53470 56.0 4.6e-265 911.0
Mch4g0458 . 83 948 Mechanosensitive Ion Channel Family AT1G53470 50.7 3.5e-233 805.1
Mch2g0398 . 50 937 Mechanosensitive Ion Channel Family AT3G14810 53.7 1.5e-249 859.4
Mch2g0398 . 50 942 Mechanosensitive Ion Channel Family AT1G78610 60.0 1.9e-284 975.3
Mch4g0458 . 58 946 Mechanosensitive Ion Channel Family AT1G78610 55.9 6.0e-262 900.6
Mch11g0085 . 60 704 Mechanosensitive Ion Channel Family AT1G78610 50.3 1.8e-181 633.3
Mch2g0398 . 227 938 Mechanosensitive Ion Channel Family AT2G17000 61.3 5.0e-237 817.8
Mch4g0458 . 271 949 Mechanosensitive Ion Channel Family AT2G17000 56.9 9.6e-212 733.8
Mch11g0446 . 17 735 Mechanosensitive Ion Channel Family AT5G19520 51.7 3.1e-190 662.1
Mch11g0446 . 67 735 Mechanosensitive Ion Channel Family AT5G12080 58.3 6.4e-204 707.6
Mch6g0955 . 58 749 Mechanosensitive Ion Channel Family AT5G12080 52.3 2.1e-191 666.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71