Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0610 ATGGCTCCTGCGACTAATTGGCTTTCTTTCTCTCTTTCTCCTATTGAAATGCTTCGCTCTGCTGAATCTCATCAGTTCGTTCCTTATGAAACTTCCTCCACCGCCTCTCCTCATCACTATCTCCTAGACAACTTTTACTCCAATGGATGGAGTAATAGCACTGCTGCTACGAACCCAAAATCGTCACAAGTTCTGTTCATGGATGGAGAGGATCAAAGCAGCGAAGTTGTTGGTAAAGAACCGATTTTTACGAGCTTTTTTCATCCACAGACCCACCAGCAGCAGCACCACCACCAGCCAAAGCTCGAAGATTTCCTCGGCGATTCGATGGTGCGATATTCCGACAGCCAAACGGAGACTCAAGATTCGTCTTTGACTCACATCTACGACCACGGCGGCGCCGCCTATTTCGGCGACCAACAGGATCTCAAAACCATTGCCGCATTTCAGGCTTTTTCTGCCAACTCCGGCTCCGAAGTTGATGACTCGGCGTCCATCGCCAGAACCCAGATCGCCGCCGGCGAGATCCCGGCTGCCGGCGCTCACTCTATTGAGTCGGTTAGAAATGAGATGGGTAGCTTCTCTAACTGCCCCACTGGCGCTCTCTCCCTAGCCGTCGCTCAGACCTCCGACACGGCGGCGGCGAGCGCGGCTCTTGTGGCCGTCGATTCCGACTCCTCTAAGAAAATTGCTGATACTTTTGGCCAGCGGACTTCCATTTACAGAGGCGTCACTAGGCACAGATGGACGGGTAGATACGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGGTGGGTATGATAAGGAGGAAAAAGCAGCTAGGGCTTATGATTTGGCAGCTTTGAAGTACTGGGGTCCAACTGCTACCACAAATTTTCCTGTTTCGAATTACACCAAAGAGTTGGAAGAGATGAAACATGTCACCAAGCAAGAGTTCATTGCTTCTTTGCGAAGAAAGAGTAGTGGTTTCTCGAGGGGTGCCTCTATTTACAGAGGTGTAACGAGGCATCATCAGCAGGGTCGATGGCAGGCGAGAATTGGCCGTGTTGCGGGGAACAAGGACCTGTATCTGGGGACGTTTGCTACTGAAGAGGAAGCAGCCGAGGCGTACGACATAGCAGCAATCAAGTTTAGAGGTTTGAACGCTGTGACCAATTTCGAGATGAGTCGATACGATGTGGAAGCTATTGCGAAGAGTGCTCTACCGATTGGGGGAGCAGCAAAGAGGCTGAAGCTTTGCCTGGAGTCCGATCAGAAACCGCTCCCGAACCACGATCAAGCAGCTCAATGCAGCAGCGGAAGCAACAGCATCAGTTTCGGCGCCAACGTGCAGGCAGTCCCGCCCATCCCTTGTGGAATTCCATATGATACTGCAGCCATGCTGTATCACCACAACTACTTCCATCATCTTCAACCTAACGCCATATCGGAGTCGACGAGCGCAGCCCTTGCAGCGCCAGTGACCATGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCATCAATCCTAT 1542 51.62 MAPATNWLSFSLSPIEMLRSAESHQFVPYETSSTASPHHYLLDNFYSNGWSNSTAATNPKSSQVLFMDGEDQSSEVVGKEPIFTSFFHPQTHQQQHHHQPKLEDFLGDSMVRYSDSQTETQDSSLTHIYDHGGAAYFGDQQDLKTIAAFQAFSANSGSEVDDSASIARTQIAAGEIPAAGAHSIESVRNEMGSFSNCPTGALSLAVAQTSDTAAASAALVAVDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLESDQKPLPNHDQAAQCSSGSNSISFGANVQAVPPIPCGIPYDTAAMLYHHNYFHHLQPNAISESTSAALAAPVTMAPQAAEFFVWPHQSY 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4122428 4126191 - MC10g0505 Mch10g0610 677703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0610 514 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0610 514 PRINTS Ethylene responsive element binding protein signature 379 399 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0610 514 CDD AP2 239 305 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0610 514 Pfam AP2 domain 340 389 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0610 514 ProSiteProfiles AP2/ERF domain profile. 339 397 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0610 514 SUPERFAMILY DNA-binding domain 338 399 IPR016177 GO:0003677(InterPro)
Mch10g0610 514 Gene3D AP2/ERF domain 240 305 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0610 514 Gene3D AP2/ERF domain 339 399 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0610 514 FunFam AP2-like ethylene-responsive transcription factor ANT 239 305 - -
Mch10g0610 514 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 119 433 - -
Mch10g0610 514 SUPERFAMILY DNA-binding domain 239 305 IPR016177 GO:0003677(InterPro)
Mch10g0610 514 CDD AP2 338 399 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0610 514 FunFam AP2-like ethylene-responsive transcription factor 338 399 - -
Mch10g0610 514 SMART rav1_2 240 309 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0610 514 SMART rav1_2 339 403 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0610 514 ProSiteProfiles AP2/ERF domain profile. 240 303 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0610 Mch-Chr10:4122428 Mch8g2499 Mch-Chr8:27903072 2.87E-115 dispersed
Mch10g0610 Mch-Chr10:4122428 Mch8g1031 Mch-Chr8:7280075 2.03E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42447 PF00847 AP2 1.90E-09 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0610 K09285 - csv:101217714 757.288