Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0620 TTCTTTACGGCCACAGCCACAGGAATTTTATGTTGTTTTTTTTTTTCTGTTTTTTCATATTTTTATTTTTCCTCCTCTTCTTTTTGTACACCACATTGTCACGGGGCAATTTTCGATGTTTGGACCAATAAAATGACGACAAGTGTTCGGAGATTTCTAAGGAGCAATGACATCAACAACTCTTCGGGGCTATTCAACGTTGTCAAGCTTCAAACAAAAAGTGGATACATAATAATGGACAATGGAATAGTCCAGGTTACTGTTTCAACTCCAGACGGGGACGTGGTCGGATTAAGCTACAATGGAATCGACAACCTTCTAGAAACCAAGAACGAAGAGCAAAACAGAGGCTACTGGGACGCTGTGTGGAACAATCCAGGCGAACACATTACCACTGACAGATTAAAAGGAACGAGCTTTGAAGTGATAATGGCAACCGAGGATCAACTGGAAATCTCGTTTAACAAAACGTGGAGTTTCGCAGTTGGGAACCAGACGGCTCCAGTGAATGTGGACAAAAGGTACGTTTTGCTGAGAGGAAGCTCTGGGTTTTATACGTATGCGATATTCGAGAGGCCCACGGGTTGGCCCGAGATAGAAATGGATCAAGTTAGGATCGTTTACAAGCTCCAAAGCAGAAAGTTTGATTACATGGCTGTATCGGACGATAGGCAGAGGGTGATGCCGACGATGGAAGATCGTAACAAGGGCGAGCCATTGGCTTATCCTGAGGCTGTTCTTTTGACCAATCCTGCCAATCAGGAGCTTAGAGGAGAGGTGGATGACAAGTACCAATACTCAACCGAGGACAAGGACAACCAAGTTCACGGCTGGATCTGCAGCGATCCGCCGGTCGGATTCTGGATGATCACTCCGAGCGACGAGTTCCGGGTGGCTGGACCCATCAAGCAGGACCTCACCTCCCACGCCGGCCCCATCACTCTCTCCATGTTCGTCAGCACTCACTACGCCGGAAAGGAAGTGGGCATGAAGTTCGCAGCCCGGGAGCCCTGGAAGAAGGTGTTCGGCCCCGTTTTCGTGTATCTCAACTCCCTCCCACCCGCCGCCCAAGATTCTTCTCTCTATCTCACTCTCTGGGAAGATGCCAAACAACAGTTGGCTACGGAAGTCAATGACTGGCCATATGATTTTCCTCAATCTCAAGACTTCCCTTCTTCCGACCAAAGAGGAAACCTCGCCGGCCGGTTACTAGTCCGCGATGGGTATATCAGTAAGAGACTGATGCGTGCCAGCAATGCTTTCGTTGGATTAGCATTGCCTGGTCCTGCCGGATCTTGGCAAAGGGAAACCAAAGGCTATCAATTCTGGACTCGAACTGACAATCATGGCAACTTCTTTATCCAAAACATCCGAGCTGGGGTTTACAATCTGTATGCTTTTGTCCCTGGCTTCATCGGAGATTATAAATACGAGGCAAATATTACAATCGAGCCTGGGTCTAAAATGAGATTGGACGTGATGATATTTGACCCGCCCAGGCAGGGTCCAACCTTGTGGGAGATCGGCTTTCCTGACCGCACTGCAGCCGAGTTTTATGTGCCCGACCCTTATCCAACCCTCATGAATAAGCTCTACAACAACCATCCCGACAAGTTGTTTAGACAATATGGCTTGTGGGAACGTTATGCGGCTATGTATCCAGATAATGATCTTGTTTATACAGTTGGTGTGGATGATTGTAGCAAGGACTGGTTCTATGCTCATGTTAACAGGAATGTGGGGAATGAAACGTATGAAGCAACCACTTGGGAAATCAAATTTTCACTGGAAACCGTGGACAAAACGGCAAATTACACACTGCAGATTGCATTGGCATCTGCTGCTACATGCAACTTACAGGTTCGGTTGAACGATGGAGGGTCCGACCGGGCCGCTTTTTCGACAGGGATGATCGGAGGGGACAATGCAATTGCAAGGCATGGCATCCATGGACTTTACTGGTTATACTCCATACCTTTAGCCGGTGACCAATTTCTGCAAGGAAACAACTCCATCTATCTCACTCAGGCAAGAAGCCAGAGCCCTTTTCAAGGCCTAATGTATGATTACATTCGACTTGAAGCTCCACCTCTAACATGA 2100 47.52 FFTATATGILCCFFFSVFSYFYFSSSSFCTPHCHGAIFDVWTNKMTTSVRRFLRSNDINNSSGLFNVVKLQTKSGYIIMDNGIVQVTVSTPDGDVVGLSYNGIDNLLETKNEEQNRGYWDAVWNNPGEHITTDRLKGTSFEVIMATEDQLEISFNKTWSFAVGNQTAPVNVDKRYVLLRGSSGFYTYAIFERPTGWPEIEMDQVRIVYKLQSRKFDYMAVSDDRQRVMPTMEDRNKGEPLAYPEAVLLTNPANQELRGEVDDKYQYSTEDKDNQVHGWICSDPPVGFWMITPSDEFRVAGPIKQDLTSHAGPITLSMFVSTHYAGKEVGMKFAAREPWKKVFGPVFVYLNSLPPAAQDSSLYLTLWEDAKQQLATEVNDWPYDFPQSQDFPSSDQRGNLAGRLLVRDGYISKRLMRASNAFVGLALPGPAGSWQRETKGYQFWTRTDNHGNFFIQNIRAGVYNLYAFVPGFIGDYKYEANITIEPGSKMRLDVMIFDPPRQGPTLWEIGFPDRTAAEFYVPDPYPTLMNKLYNNHPDKLFRQYGLWERYAAMYPDNDLVYTVGVDDCSKDWFYAHVNRNVGNETYEATTWEIKFSLETVDKTANYTLQIALASAATCNLQVRLNDGGSDRAAFSTGMIGGDNAIARHGIHGLYWLYSIPLAGDQFLQGNNSIYLTQARSQSPFQGLMYDYIRLEAPPLT 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4211984 4217642 - MC10g0514 Mch10g0620 677713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0620 699 CDD RGL4_M 395 491 IPR029413 -
Mch10g0620 699 Pfam Polysaccharide lyase family 4, domain II 418 489 IPR029413 -
Mch10g0620 699 SUPERFAMILY Galactose mutarotase-like 75 353 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Mch10g0620 699 FunFam Rhamnogalacturonate lyase B 392 491 - -
Mch10g0620 699 Pfam Polysaccharide lyase family 4, domain III 504 693 IPR029411 -
Mch10g0620 699 SUPERFAMILY Starch-binding domain-like 438 494 IPR013784 GO:0030246(InterPro)
Mch10g0620 699 Gene3D - 395 494 - -
Mch10g0620 699 Gene3D - 68 342 IPR014718 GO:0030246(InterPro)
Mch10g0620 699 SUPERFAMILY Galactose-binding domain-like 502 694 IPR008979 -
Mch10g0620 699 Pfam Rhamnogalacturonate lyase family 57 260 IPR010325 -
Mch10g0620 699 CDD RGL4_N 68 351 - -
Mch10g0620 699 Gene3D - 502 694 - -
Mch10g0620 699 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 67 697 IPR051850 -
Mch10g0620 699 CDD RGL4_C 506 694 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0620 Mch-Chr10:4211984 Mch8g0257 Mch-Chr8:1723657 7.76E-275 dispersed
Mch1g1361 Mch-Chr1:15568781 Mch10g0620 Mch-Chr10:4211984 8.64E-290 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0620 K18195 - csv:101215252 1122.84