Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0641 ATGGTGCTGGGTCTAGAATCTGTAGCGTTTCAGCAGGACTTGATTGCTTGTGGGTGGAAGGATCTGCAACCCATGGGGAGCGGTGAGATTCTTCGGAGCTTTGTCTATGGCGGATTTGGAGAAAACGACTGTGGCGGCGGCGGCGGAGCTGAGATTTTGAATACACCCAATTGGGGACATTCTTCGCCAAATTCTGCCTCCTTCCCGGAATATAATTGTGCTCTGAATAAACGGTCGACGGAGGGTGATCCGGCGGCGAAGAGAGGGCGGCGAAAGCGGCGGAGGGGAAAGATGGTGAAGAATAGTGAAGAAATTGAGAACCAGAGAATGACCCACATCGCCGTCGAACGCAATCGGAGAAAGCAAATGAATGAGTACCTTTCTATGCTGCGTACCATGATGCCTTCTTCTTATACCCAAAGGGGAGACCAGGCATCAATCGTGGGAGGCACGATCAACTTTGTGAAGGAGCTGGAACAACTTGTGCAATGCTTAGAGGCTGAGAAGCAAACCCATAATTTTTTCTCCGGCCGTGACTCGGTCAACTCGGCCGCGGAGAATCGGGCGATGACGGTGGACGTGGAGGTGACGGTGATAGAAAGCTACGCCAATATCAAGATGATAGCAGAGAAGCGGCCGAGGCAGCTTCTAAAAGTGGTGGTGGAATTACATTCTCTTCACCTTTTAGTTCTTCACATTAACGTCACAACTATTCGCGAAATGGTTCTCTATTATTTCAGCGTTAAGATTGAGGATGACTGTAAACTGAGCACAGTGGGTGAGATTACTGCAGCTGTGCATGAAATGTTCGGAAGGATCCATGTGGAA 828 49.64 MVLGLESVAFQQDLIACGWKDLQPMGSGEILRSFVYGGFGENDCGGGGGAEILNTPNWGHSSPNSASFPEYNCALNKRSTEGDPAAKRGRRKRRRGKMVKNSEEIENQRMTHIAVERNRRKQMNEYLSMLRTMMPSSYTQRGDQASIVGGTINFVKELEQLVQCLEAEKQTHNFFSGRDSVNSAAENRAMTVDVEVTVIESYANIKMIAEKRPRQLLKVVVELHSLHLLVLHINVTTIREMVLYYFSVKIEDDCKLSTVGEITAAVHEMFGRIHVE 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4392563 4394730 + MC10g0529 Mch10g0641 677734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0641 276 Gene3D - 99 173 IPR036638 GO:0046983(InterPro)
Mch10g0641 276 SMART finulus 113 164 IPR011598 GO:0046983(InterPro)
Mch10g0641 276 MobiDBLite consensus disorder prediction 77 102 - -
Mch10g0641 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 172 IPR036638 GO:0046983(InterPro)
Mch10g0641 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 107 158 IPR011598 GO:0046983(InterPro)
Mch10g0641 276 Pfam Helix-loop-helix DNA-binding domain 108 159 IPR011598 GO:0046983(InterPro)
Mch10g0641 276 CDD bHLH_AtFAMA_like 110 171 - -
Mch10g0641 276 PANTHER MAX DIMERIZATION, MAD 73 272 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0641 Mch-Chr10:4392563 Mch8g2872 Mch-Chr8:31541311 1.96E-59 dispersed
Mch10g0641 Mch-Chr10:4392563 Mch1g1351 Mch-Chr1:15515638 2.77E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42451 PF00010 HLH 2.50E-10 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0641 - - - 0.0