Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g0641 | ATGGTGCTGGGTCTAGAATCTGTAGCGTTTCAGCAGGACTTGATTGCTTGTGGGTGGAAGGATCTGCAACCCATGGGGAGCGGTGAGATTCTTCGGAGCTTTGTCTATGGCGGATTTGGAGAAAACGACTGTGGCGGCGGCGGCGGAGCTGAGATTTTGAATACACCCAATTGGGGACATTCTTCGCCAAATTCTGCCTCCTTCCCGGAATATAATTGTGCTCTGAATAAACGGTCGACGGAGGGTGATCCGGCGGCGAAGAGAGGGCGGCGAAAGCGGCGGAGGGGAAAGATGGTGAAGAATAGTGAAGAAATTGAGAACCAGAGAATGACCCACATCGCCGTCGAACGCAATCGGAGAAAGCAAATGAATGAGTACCTTTCTATGCTGCGTACCATGATGCCTTCTTCTTATACCCAAAGGGGAGACCAGGCATCAATCGTGGGAGGCACGATCAACTTTGTGAAGGAGCTGGAACAACTTGTGCAATGCTTAGAGGCTGAGAAGCAAACCCATAATTTTTTCTCCGGCCGTGACTCGGTCAACTCGGCCGCGGAGAATCGGGCGATGACGGTGGACGTGGAGGTGACGGTGATAGAAAGCTACGCCAATATCAAGATGATAGCAGAGAAGCGGCCGAGGCAGCTTCTAAAAGTGGTGGTGGAATTACATTCTCTTCACCTTTTAGTTCTTCACATTAACGTCACAACTATTCGCGAAATGGTTCTCTATTATTTCAGCGTTAAGATTGAGGATGACTGTAAACTGAGCACAGTGGGTGAGATTACTGCAGCTGTGCATGAAATGTTCGGAAGGATCCATGTGGAA | 828 | 49.64 | MVLGLESVAFQQDLIACGWKDLQPMGSGEILRSFVYGGFGENDCGGGGGAEILNTPNWGHSSPNSASFPEYNCALNKRSTEGDPAAKRGRRKRRRGKMVKNSEEIENQRMTHIAVERNRRKQMNEYLSMLRTMMPSSYTQRGDQASIVGGTINFVKELEQLVQCLEAEKQTHNFFSGRDSVNSAAENRAMTVDVEVTVIESYANIKMIAEKRPRQLLKVVVELHSLHLLVLHINVTTIREMVLYYFSVKIEDDCKLSTVGEITAAVHEMFGRIHVE | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4392563 | 4394730 | + | MC10g0529 | Mch10g0641 | 677734 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g0641 | 276 | Gene3D | - | 99 | 173 | IPR036638 | GO:0046983(InterPro) | |
Mch10g0641 | 276 | SMART | finulus | 113 | 164 | IPR011598 | GO:0046983(InterPro) | |
Mch10g0641 | 276 | MobiDBLite | consensus disorder prediction | 77 | 102 | - | - | |
Mch10g0641 | 276 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 107 | 172 | IPR036638 | GO:0046983(InterPro) | |
Mch10g0641 | 276 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 107 | 158 | IPR011598 | GO:0046983(InterPro) | |
Mch10g0641 | 276 | Pfam | Helix-loop-helix DNA-binding domain | 108 | 159 | IPR011598 | GO:0046983(InterPro) | |
Mch10g0641 | 276 | CDD | bHLH_AtFAMA_like | 110 | 171 | - | - | |
Mch10g0641 | 276 | PANTHER | MAX DIMERIZATION, MAD | 73 | 272 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0641 | Mch-Chr10:4392563 | Mch8g2872 | Mch-Chr8:31541311 | 1.96E-59 | dispersed | |
Mch10g0641 | Mch-Chr10:4392563 | Mch1g1351 | Mch-Chr1:15515638 | 2.77E-06 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42451 | PF00010 | HLH | 2.50E-10 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g0641 | - | - | - | 0.0 |