Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g0644 | ATGAAGAGGCCTACTGCAGGCAGCTCAGATTCCTTGGGTGCACTCATGTCCATTTGCCCAACTTCAGATAAGGAACAGAGTCCGAGAAACAACCATGTTTACGGGGCTGAGTTCCAGTCTATGCTTGATGGGTTTGATGAAGAAGGGTGCGTTGAAGAATCGGGACATGTTTCGGAGAAGAAGAGGCGACTGAGTGTCGAGCAAGTTAAGGCTCTGGAGAAGAATTTCGAAGTGGAAAACAAGCTCGAACCAGAGAGGAAAGTGAAGCTGGCTCGAGAACTTGGTTTGCAGCCTCGACAAGTGGCCGTTTGGTTTCAAAATCGTCGAGCCAGATGGAAAACCAAGCAATTAGAAAGAGATTATGGCGTTCTCAAAACCAATTATGAAAAACTCAAGCTCAATTACGAAACTCTCCAACAGGACAATCACGCTCTCCTCAAGGAGATTCGGGAACTGAAATCGAAGCTTCAAGAAGATAACTCGGAGAGCAATGTTTCGGTGGAGGAAGAGATGGTGTTGGCGGCCGCCGACTCTGAGAATGCTCTGATTGAAAAAACAGAGCCGGAAACCGGTGACTTCTCTGTTCCTCCGGCGACGGAGTTAAAAGACCTCAATTACGAGAGCTTCAACAACAATGGCGGAGAAGGAGAAGAGGTACCAACGGAAGAGGCCTCATTGTTCCCCGATTTCAAAGATGGGTCATCCGATAGCGATTCGAGCGCAATTTTAAACGAAGATTACAGCTCCACGGCGGCCATTTCTTCACCGGGGGTGCTGCAGAACCAGCACTACCACTTCATGGCGGCATCTCCGTCTCCGTCTCCCTCCGCCGCCGTGAAATTCAACTGCTCAACGGCAGCGCTCAATTACTGGCAGTTTCAGAAGGCGTATCAACAAACCCAGGTGTATCCGAAAATGGAGGAGCATAATTTCTTCACCGGAGAGGAGGGTTGCTGCAACTTCTTCTCCGAGGAGCAAGCTCCGAGTCTGCACTGGTGGAGCTAA | 1005 | 49.65 | MKRPTAGSSDSLGALMSICPTSDKEQSPRNNHVYGAEFQSMLDGFDEEGCVEESGHVSEKKRRLSVEQVKALEKNFEVENKLEPERKVKLARELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKTNYEKLKLNYETLQQDNHALLKEIRELKSKLQEDNSESNVSVEEEMVLAAADSENALIEKTEPETGDFSVPPATELKDLNYESFNNNGGEGEEVPTEEASLFPDFKDGSSDSDSSAILNEDYSSTAAISSPGVLQNQHYHFMAASPSPSPSAAVKFNCSTAALNYWQFQKAYQQTQVYPKMEEHNFFTGEEGCCNFFSEEQAPSLHWWS | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4417250 | 4420190 | - | MC10g0532 | Mch10g0644 | 677737 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g0644 | 334 | CDD | homeodomain | 60 | 116 | IPR001356 | GO:0003677(InterPro) | |
Mch10g0644 | 334 | ProSiteProfiles | 'Homeobox' domain profile. | 55 | 115 | IPR001356 | GO:0003677(InterPro) | |
Mch10g0644 | 334 | Gene3D | - | 55 | 122 | - | - | |
Mch10g0644 | 334 | SUPERFAMILY | Homeodomain-like | 43 | 117 | IPR009057 | - | |
Mch10g0644 | 334 | MobiDBLite | consensus disorder prediction | 205 | 241 | - | - | |
Mch10g0644 | 334 | ProSitePatterns | 'Homeobox' domain signature. | 90 | 113 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Mch10g0644 | 334 | Coils | Coil | 114 | 162 | - | - | |
Mch10g0644 | 334 | Pfam | Homeobox associated leucine zipper | 115 | 157 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch10g0644 | 334 | Pfam | Homeodomain | 60 | 113 | IPR001356 | GO:0003677(InterPro) | |
Mch10g0644 | 334 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 41 | 332 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Mch10g0644 | 334 | FunFam | Homeobox-leucine zipper protein HAT5 | 53 | 117 | - | - | |
Mch10g0644 | 334 | PRINTS | Lambda-repressor HTH signature | 95 | 111 | IPR000047 | GO:0003677(InterPro) | |
Mch10g0644 | 334 | PRINTS | Lambda-repressor HTH signature | 86 | 95 | IPR000047 | GO:0003677(InterPro) | |
Mch10g0644 | 334 | SMART | HOX_1 | 58 | 119 | IPR001356 | GO:0003677(InterPro) | |
Mch10g0644 | 334 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Mch10g0644 | 334 | MobiDBLite | consensus disorder prediction | 10 | 30 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0644 | Mch-Chr10:4417250 | Mch1g1396 | Mch-Chr1:15826425 | 1.36E-98 | dispersed | |
Mch10g0637 | Mch-Chr10:4355527 | Mch10g0644 | Mch-Chr10:4417250 | 1.27E-11 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42452 | PF00046 | Homeodomain | 4.20E-16 | CL0123 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g0644 | K09338 | - | vvi:100853966 | 369.777 |