Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0644 ATGAAGAGGCCTACTGCAGGCAGCTCAGATTCCTTGGGTGCACTCATGTCCATTTGCCCAACTTCAGATAAGGAACAGAGTCCGAGAAACAACCATGTTTACGGGGCTGAGTTCCAGTCTATGCTTGATGGGTTTGATGAAGAAGGGTGCGTTGAAGAATCGGGACATGTTTCGGAGAAGAAGAGGCGACTGAGTGTCGAGCAAGTTAAGGCTCTGGAGAAGAATTTCGAAGTGGAAAACAAGCTCGAACCAGAGAGGAAAGTGAAGCTGGCTCGAGAACTTGGTTTGCAGCCTCGACAAGTGGCCGTTTGGTTTCAAAATCGTCGAGCCAGATGGAAAACCAAGCAATTAGAAAGAGATTATGGCGTTCTCAAAACCAATTATGAAAAACTCAAGCTCAATTACGAAACTCTCCAACAGGACAATCACGCTCTCCTCAAGGAGATTCGGGAACTGAAATCGAAGCTTCAAGAAGATAACTCGGAGAGCAATGTTTCGGTGGAGGAAGAGATGGTGTTGGCGGCCGCCGACTCTGAGAATGCTCTGATTGAAAAAACAGAGCCGGAAACCGGTGACTTCTCTGTTCCTCCGGCGACGGAGTTAAAAGACCTCAATTACGAGAGCTTCAACAACAATGGCGGAGAAGGAGAAGAGGTACCAACGGAAGAGGCCTCATTGTTCCCCGATTTCAAAGATGGGTCATCCGATAGCGATTCGAGCGCAATTTTAAACGAAGATTACAGCTCCACGGCGGCCATTTCTTCACCGGGGGTGCTGCAGAACCAGCACTACCACTTCATGGCGGCATCTCCGTCTCCGTCTCCCTCCGCCGCCGTGAAATTCAACTGCTCAACGGCAGCGCTCAATTACTGGCAGTTTCAGAAGGCGTATCAACAAACCCAGGTGTATCCGAAAATGGAGGAGCATAATTTCTTCACCGGAGAGGAGGGTTGCTGCAACTTCTTCTCCGAGGAGCAAGCTCCGAGTCTGCACTGGTGGAGCTAA 1005 49.65 MKRPTAGSSDSLGALMSICPTSDKEQSPRNNHVYGAEFQSMLDGFDEEGCVEESGHVSEKKRRLSVEQVKALEKNFEVENKLEPERKVKLARELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKTNYEKLKLNYETLQQDNHALLKEIRELKSKLQEDNSESNVSVEEEMVLAAADSENALIEKTEPETGDFSVPPATELKDLNYESFNNNGGEGEEVPTEEASLFPDFKDGSSDSDSSAILNEDYSSTAAISSPGVLQNQHYHFMAASPSPSPSAAVKFNCSTAALNYWQFQKAYQQTQVYPKMEEHNFFTGEEGCCNFFSEEQAPSLHWWS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4417250 4420190 - MC10g0532 Mch10g0644 677737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0644 334 CDD homeodomain 60 116 IPR001356 GO:0003677(InterPro)
Mch10g0644 334 ProSiteProfiles 'Homeobox' domain profile. 55 115 IPR001356 GO:0003677(InterPro)
Mch10g0644 334 Gene3D - 55 122 - -
Mch10g0644 334 SUPERFAMILY Homeodomain-like 43 117 IPR009057 -
Mch10g0644 334 MobiDBLite consensus disorder prediction 205 241 - -
Mch10g0644 334 ProSitePatterns 'Homeobox' domain signature. 90 113 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch10g0644 334 Coils Coil 114 162 - -
Mch10g0644 334 Pfam Homeobox associated leucine zipper 115 157 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0644 334 Pfam Homeodomain 60 113 IPR001356 GO:0003677(InterPro)
Mch10g0644 334 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 41 332 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Mch10g0644 334 FunFam Homeobox-leucine zipper protein HAT5 53 117 - -
Mch10g0644 334 PRINTS Lambda-repressor HTH signature 95 111 IPR000047 GO:0003677(InterPro)
Mch10g0644 334 PRINTS Lambda-repressor HTH signature 86 95 IPR000047 GO:0003677(InterPro)
Mch10g0644 334 SMART HOX_1 58 119 IPR001356 GO:0003677(InterPro)
Mch10g0644 334 MobiDBLite consensus disorder prediction 1 30 - -
Mch10g0644 334 MobiDBLite consensus disorder prediction 10 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0644 Mch-Chr10:4417250 Mch1g1396 Mch-Chr1:15826425 1.36E-98 dispersed
Mch10g0637 Mch-Chr10:4355527 Mch10g0644 Mch-Chr10:4417250 1.27E-11 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42452 PF00046 Homeodomain 4.20E-16 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0644 K09338 - vvi:100853966 369.777