Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g0649 | TATCGAGAGTGCTTGAAGAACCACGCCGTCGCCCTCGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCGGCCGGGCCCGACGGCTCCCTCGACGCCCTCAAATGCGCCGCCTGCACCTGCCACCGGAACTTCCACCGCAAGGACGCGCCGTTGATCTCCTACAGCCGGGCTCCGGCGGGGTACCTCCACGTGGCGCCGGAGCGGCGGATGCTGGCCCTGCCGGCGCCGGCGGAGATGGGGAGGAAGAGGATGCGGACGAAGTTCACGGAGGAGCAGAAGGAGAAGATGTTGGGGATGGCGGAGAAGCTGGAGTGGCGGATCGAGAAGGAGGACGAGGCGGCGGTGGCGGAGTTCTGCAACGCGATCGGCGTGAAGCGGCGCGTGCTCAAGGTCTGGATGCATAACAACAAGAACACGTTTCGTAAG | 432 | 66.67 | YRECLKNHAVALGGHALDGCGEFMPAGPDGSLDALKCAACTCHRNFHRKDAPLISYSRAPAGYLHVAPERRMLALPAPAEMGRKRMRTKFTEEQKEKMLGMAEKLEWRIEKEDEAAVAEFCNAIGVKRRVLKVWMHNNKNTFRK | 144 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 4470006 | 4470437 | + | MC10g0536 | Mch10g0649 | 677742 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g0649 | 144 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 1 | 141 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER) | |
Mch10g0649 | 144 | NCBIfam | homeobox domain, ZF-HD class | 83 | 140 | IPR006455 | - | |
Mch10g0649 | 144 | FunFam | Zinc-finger homeodomain protein 2 | 73 | 144 | - | - | |
Mch10g0649 | 144 | Gene3D | - | 76 | 143 | - | - | |
Mch10g0649 | 144 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 1 | 50 | IPR006456 | - | |
Mch10g0649 | 144 | SUPERFAMILY | Homeodomain-like | 79 | 144 | IPR009057 | - | |
Mch10g0649 | 144 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 1 | 50 | IPR006456 | - | |
Mch10g0649 | 144 | Pfam | ZF-HD protein dimerisation region | 1 | 50 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0649 | Mch-Chr10:4470006 | Mch8g0250 | Mch-Chr8:1661113 | 1.10E-50 | dispersed | |
Mch3g1562 | Mch-Chr3:17648051 | Mch10g0649 | Mch-Chr10:4470006 | 4.90E-40 | transposed | |
Mch1g1388 | Mch-Chr1:15767323 | Mch10g0649 | Mch-Chr10:4470006 | 4.11E-67 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42453 | PF04770 | ZF-HD_dimer | 4.30E-28 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g0649 | - | - | - | 0.0 |