Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0649 TATCGAGAGTGCTTGAAGAACCACGCCGTCGCCCTCGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCGGCCGGGCCCGACGGCTCCCTCGACGCCCTCAAATGCGCCGCCTGCACCTGCCACCGGAACTTCCACCGCAAGGACGCGCCGTTGATCTCCTACAGCCGGGCTCCGGCGGGGTACCTCCACGTGGCGCCGGAGCGGCGGATGCTGGCCCTGCCGGCGCCGGCGGAGATGGGGAGGAAGAGGATGCGGACGAAGTTCACGGAGGAGCAGAAGGAGAAGATGTTGGGGATGGCGGAGAAGCTGGAGTGGCGGATCGAGAAGGAGGACGAGGCGGCGGTGGCGGAGTTCTGCAACGCGATCGGCGTGAAGCGGCGCGTGCTCAAGGTCTGGATGCATAACAACAAGAACACGTTTCGTAAG 432 66.67 YRECLKNHAVALGGHALDGCGEFMPAGPDGSLDALKCAACTCHRNFHRKDAPLISYSRAPAGYLHVAPERRMLALPAPAEMGRKRMRTKFTEEQKEKMLGMAEKLEWRIEKEDEAAVAEFCNAIGVKRRVLKVWMHNNKNTFRK 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4470006 4470437 + MC10g0536 Mch10g0649 677742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0649 144 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 141 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Mch10g0649 144 NCBIfam homeobox domain, ZF-HD class 83 140 IPR006455 -
Mch10g0649 144 FunFam Zinc-finger homeodomain protein 2 73 144 - -
Mch10g0649 144 Gene3D - 76 143 - -
Mch10g0649 144 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 1 50 IPR006456 -
Mch10g0649 144 SUPERFAMILY Homeodomain-like 79 144 IPR009057 -
Mch10g0649 144 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 1 50 IPR006456 -
Mch10g0649 144 Pfam ZF-HD protein dimerisation region 1 50 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0649 Mch-Chr10:4470006 Mch8g0250 Mch-Chr8:1661113 1.10E-50 dispersed
Mch3g1562 Mch-Chr3:17648051 Mch10g0649 Mch-Chr10:4470006 4.90E-40 transposed
Mch1g1388 Mch-Chr1:15767323 Mch10g0649 Mch-Chr10:4470006 4.11E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42453 PF04770 ZF-HD_dimer 4.30E-28 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0649 - - - 0.0