Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0671 ATGAAAATGATGTTAGTTAGGATGGGAGAACTCTATCTTACAGTGATAATACTGGCTTGCTTTCATTATTCTGCACTGTCTGATTATCAAGGTGATGCACTATTTGCATTGAAGAGTGCATTGAATGCAACAACAAACCAGCTCACAGATTGGAACCCAAATCAAGTCAATCCATGCACTTGGTCCAATGTTATATGTTATGGAAACAATGTGATCTCTGTATCCTTGTCAACAATGGGATTTACTGGAACCTTGTCTCCGAAAATTGGAGTTCTAACATCACTTTCAACCCTGATTTTGCTGGGCAATAATATAACTGGCGAGATACCAGAGGATTTTGGAAACCTGAAAAATTTGGTCAGTTTGGATTTGGGAAATAACAGCCTAACTGGTCAAATACCATCTTCCTTGGGTAATCTGAAGAAACTACAGTTCCTAACTCTTAGTCAAAATCATCTAACTGGGACTGTTCCTCAGTCACTTTCTAGCCTTCCTAGCTTGATCAGTCTTTTAGTTGATTTGAATGATCTCAGTGGTCCAATTCCGGAGCAGTTATTTCAAGTTCCAAAATTCAACTTCTCTGGAAACATGTTGACTTGTGGCAAAAAGTATCCTCAGCCTTGCGCTTCAGACAGTACAAACTCAGGTTCTTCAAATAAGCCGAAGGTTGGCCTGATAGTTGGACTTATTGCTGGGTTTACCGTTGTTCTTCTCTTGGTCTGTTTATTGTTTTGCTTGTGCAAAGGTAGATATAAAGCCTACAGGCGTGAAGTCTTTGTAGATGTTCCAGGTGAAGTTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTGCATGGAGGGAACTACAACTAGCTACAGAAAACTTTAGTGAGAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAGGTGTATAAAGGGGTGCTTGCTGATGGCACAAAAGTTGCAGTGAAACGGTTGACTGATTATGAAAGTCCGGGGGGAGATGCTGCTTTCCAGCGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAGGAATCTATTGCGGTTGATTGGATTTTGTACAACTCAGACAGAACGCCTATTGGTGTATCCCTATATGCAGAATTTGAGTGTTGCCTACCGTCTTCGAGAACTTAAGCCGGGAGAACCCATTTTAGATTGGCCTACTCGAAAACGTGTGGCATTGGGCACGGCTCGTGGTTTAGAGTATCTTCACGAACATTGCAATCCAAAGATTATTCATCGAGATGTTAAGGCCGCTAATGTATTGTTGGACGAAGATTTTGAAGCAGTTGTTGGCGATTTTGGTCTAGCAAAGTTGGTTGATGTTAGGAAGACTAATGTCACTACCCAAGTTCGGGGGACGATGGGTCACATAGCACCAGAATACTTATCAACAGGAAAGTCGTCAGAAAGGACTGATGTTTTTGGTTATGGTATCATGCTTTTAGAACTAGTTACTGGGCAACGTGCAATTGATTTCTCGCGCTTAGAAGAAGAAGATGATGTTTTACTCCTCGACCATGTGAAGAAAATGGAAAAGGAGAAGCGAATCAATACTATCGTCGATCGAAACCTGAATGACTACAACATTCAAGAGGTGGAGACGATGATCCAAGTTGCACTCCTGTGCACGCAGTCATGTTCAAATGACCGGCCAGCAATGTCGCATGTGATTCGAATGCTGGAAGGAGAGGGACTTGCAGAGAGGTGGGAAGAATGGCAGCATTCGGAGGGGACTCGCAGACAAGAAACTGAGAGACTGGAAAGAAGATTTGAATTGGGGGAGTACTCCATTCATAAACAGAATGCTATTCAGTTGTCTGGTGGAAGATGA 1839 42.03 MKMMLVRMGELYLTVIILACFHYSALSDYQGDALFALKSALNATTNQLTDWNPNQVNPCTWSNVICYGNNVISVSLSTMGFTGTLSPKIGVLTSLSTLILLGNNITGEIPEDFGNLKNLVSLDLGNNSLTGQIPSSLGNLKKLQFLTLSQNHLTGTVPQSLSSLPSLISLLVDLNDLSGPIPEQLFQVPKFNFSGNMLTCGKKYPQPCASDSTNSGSSNKPKVGLIVGLIAGFTVVLLLVCLLFCLCKGRYKAYRREVFVDVPGEVDRRIAFGQLKRFAWRELQLATENFSEKNVLGQGGFGKVYKGVLADGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPYMQNLSVAYRLRELKPGEPILDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKMEKEKRINTIVDRNLNDYNIQEVETMIQVALLCTQSCSNDRPAMSHVIRMLEGEGLAERWEEWQHSEGTRRQETERLERRFELGEYSIHKQNAIQLSGGR 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4619136 4638047 + MC10g0557 Mch10g0671 677764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0671 612 Gene3D Ribonuclease Inhibitor 27 209 IPR032675 -
Mch10g0671 612 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Mch10g0671 612 SMART serkin_6 290 563 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0671 612 SUPERFAMILY Protein kinase-like (PK-like) 270 564 IPR011009 -
Mch10g0671 612 SUPERFAMILY L domain-like 29 199 - -
Mch10g0671 612 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524(InterPro)
Mch10g0671 612 Pfam Protein tyrosine and serine/threonine kinase 293 563 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch10g0671 612 FunFam Putative LRR receptor-like serine/threonine-protein kinase 27 210 - -
Mch10g0671 612 Gene3D Transferase(Phosphotransferase) domain 1 367 583 - -
Mch10g0671 612 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 16 611 - -
Mch10g0671 612 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Mch10g0671 612 FunFam Somatic embryogenesis receptor-like kinase 1 367 583 - -
Mch10g0671 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch10g0671 612 FunFam Somatic embryogenesis receptor kinase 1 259 366 - -
Mch10g0671 612 ProSiteProfiles Protein kinase domain profile. 290 568 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0671 612 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0671 Mch-Chr10:4619136 Mch2g1499 Mch-Chr2:11400069 3.76E-197 dispersed
Mch10g1441 Mch-Chr10:13874366 Mch10g0671 Mch-Chr10:4619136 1.03E-16 dispersed
Mch8g1633 Mch-Chr8:13518016 Mch10g0671 Mch-Chr10:4619136 2.73E-34 dispersed
Mch10g0671 Mch-Chr10:4619136 Mch4g2400 Mch-Chr4:25103365 1.90E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77006 PF00069 Pkinase 2.90E-43 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0671 - - - 0.0