Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0690 ATGATGGTGGAGTTTCATGGAGAAATTCGCCCCCACGATGGAGACAACGAAGAACAGGAAGAAGAGGAAGAAATTAGCTACGATGACCTCAAGAAACGAATGTGGAAAGACAGGCAGAGGCTGAAGAAGATGAAGGAGACGCGTGACAGCGAAGAGCCGGACTCGGCGGCCAGAGAAGAGGCCTCTCGCCGGAAAAAGATGGCCAGAGCCCAAGATTCGATCCTCAAGTATATGGATAAGATAATGGAGGCTTGTAAGGCACAGGGGTTTGTTTATGGGATTGTGCCGGAGAAGGGGAAACCGGTCACCGGCTCCTCCGAGAGCCTCCGCGAGTGGTGGCGGGACGATGTCCGGTTCGAACAAGATGCTCCCATTGCCATAGCTGAATACCTTCCCAAGGTAATCGAAGAAACAGGGCTCGACACGGCGTCGTTTTTGCACCTCCTCCACGATTTACAGGACACCACTTTGGGGTCGATTCTCTCTGCTCTGATGCAGCACTGTATGCCGCCGCAGAGGAAATTCCCGCTGGAGAAGGGATTGGCGCCGCCGTGGTGGCCGACGGGGAAGGAAATTTGGTGGGGGGAACAGGGCGCCGCCGGTGGGCACGGCGTTCCGCCTTACAAAAAGCCCCACGACCTCAAAAAGGCATGGAAAATCAGCCTTCTCGCGGCGGTGATTAAGCACATGTCCCCTGATATGGACAACATGAGGAAACTCGTCCGGCAATCGAAGAATTTGCAGGCGAAAATGACGGCTAAAGAGACGTTAACTTGGACTAAAGTCGTGAACCAAGAAGAAGCCCTCTTGGAATTAACCAAAAAGAGCCTGAAAATCACTGGAGAAGAACATGAAGAAAACAGAGCAGAAGAAGAAGAAACCAGAGCAGAGGAACTCGTTGGAGGGGGAGGGGGAACCACCCATTTTCGAGGGAATGAGAAACGGAAGTGTTTATTCAATCGAGAAACTGCGGGCGACACGGCCCTGTATACTTGCCAGAACAAATGGTGCCCACAGAGCGAGTCCTTGATGGGATTCGTGGACAAGAACGCAAGAACAGAGCACGAGGCGCAGTGCGTATACAGAAACAACGCAGTGGTGGAGGCAGGGCAGTTTTCAGACGAGCATGCGATCGACAATCATCTGAAGAGCGTGGTGGAGTGGATGAACTTGGAGCTGGCGAGGGCAGAGCCGAACAGCAGCGAGGAGGCACGGATGGAGGACAACGGAGATGGGTCCGAGAGCAGGGCGGTGGAGAATTACGGCACCAGGTACTGGAAGGCCGGCGTGGGAGAGGCGACGGTGGACGAGGCGTTTGAGATGCACAGCGAGAGCATGGATTTGAATGTTAGTCCGACGGAAGATGAGGGCTGCCATCAAGATGCCACTTCTATTTGGGATTTGAGATACGAATGGACTGAAGAA 1425 53.68 MMVEFHGEIRPHDGDNEEQEEEEEISYDDLKKRMWKDRQRLKKMKETRDSEEPDSAAREEASRRKKMARAQDSILKYMDKIMEACKAQGFVYGIVPEKGKPVTGSSESLREWWRDDVRFEQDAPIAIAEYLPKVIEETGLDTASFLHLLHDLQDTTLGSILSALMQHCMPPQRKFPLEKGLAPPWWPTGKEIWWGEQGAAGGHGVPPYKKPHDLKKAWKISLLAAVIKHMSPDMDNMRKLVRQSKNLQAKMTAKETLTWTKVVNQEEALLELTKKSLKITGEEHEENRAEEEETRAEELVGGGGGTTHFRGNEKRKCLFNRETAGDTALYTCQNKWCPQSESLMGFVDKNARTEHEAQCVYRNNAVVEAGQFSDEHAIDNHLKSVVEWMNLELARAEPNSSEEARMEDNGDGSESRAVENYGTRYWKAGVGEATVDEAFEMHSESMDLNVSPTEDEGCHQDATSIWDLRYEWTEE 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4728690 4730114 - MC10g0576 Mch10g0690 677783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0690 475 MobiDBLite consensus disorder prediction 26 65 - -
Mch10g0690 475 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 10 416 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Mch10g0690 475 MobiDBLite consensus disorder prediction 397 416 - -
Mch10g0690 475 MobiDBLite consensus disorder prediction 1 65 - -
Mch10g0690 475 FunFam Ethylene insensitive 3-like 1 140 277 - -
Mch10g0690 475 Coils Coil 274 294 - -
Mch10g0690 475 Pfam Ethylene insensitive 3, DNA-binding domain 28 267 IPR047091 GO:0003700(InterPro)
Mch10g0690 475 Coils Coil 27 47 - -
Mch10g0690 475 MobiDBLite consensus disorder prediction 398 414 - -
Mch10g0690 475 Gene3D - 139 276 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Mch10g0690 475 Gene3D - 56 138 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Mch10g0690 475 SUPERFAMILY DNA-binding domain of EIN3-like 146 270 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0690 K14514 - - csv:116406094 650.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0690 Mch-Chr10:4728690 Mch6g1072 Mch-Chr6:7712561 3.74E-101 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g1072 . 1 627 EIL Transcription Factor Family AT2G27050 58.1 1.1e-190 663.3
Mch4g1944 . 1 505 EIL Transcription Factor Family AT2G27050 62.6 2.8e-170 595.5
Mch6g1072 . 33 333 EIL Transcription Factor Family AT1G73730 63.1 7.9e-106 381.3
Mch4g1944 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 2.2e-103 373.2
Mch10g0690 . 24 271 EIL Transcription Factor Family AT1G73730 54.5 2.5e-75 280.0
Mch6g1072 . 2 627 EIL Transcription Factor Family AT3G20770 62.6 3.8e-213 738.0
Mch4g1944 . 7 505 EIL Transcription Factor Family AT3G20770 63.6 1.3e-173 606.7
Mch10g0690 . 24 364 EIL Transcription Factor Family AT5G10120 55.7 2.7e-102 369.4
Mch4g1944 . 32 300 EIL Transcription Factor Family AT5G10120 58.1 3.8e-85 312.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42455 PF04873 EIN3 2.10E-110 No_clan Mch TF