Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0715 ATGAACTCATCATCCACTAAATTTTACAATCCAGGAAGGATGGGATTGTATGAACCGATCCATCAGATTGGAATGTGGGGAGAAACCTTTAAAATCAATGCCAATTTAGATACACCACCATCTCTCGTTATCCAAGCTGAAACCAAGCTAGAAAATCAGTCAGATGATGCCTCTCTCGGCTCACTCGGAGATCCTCACATGTATGACCAAGAAGATACCAGACGCATTGATAAGATTCAAAGACGTCTCGCCCAAAATCGGGAAGCAGCTCGTAAAAGTCGCCTACGAAAGAAGGCCTATATCAAGCAATTGGAAACAAGCCGCTTGAAACTCATTCAATTAGAGCAAGAGCTTGAAAAAGCGCGACATCAAGGTCTGTTTTCTGGCTCCCGATTTGATGCTAACCAGTTGGGTTTCTCTGGAACCACAAATTCAGGCATCTCTGCCTTTGAATCAGAGTACGAGCAATGGGTAGAAGAGCAGAACAGGCAGATTAGTGATCTGAAGACTGCTGTGCATGCTAATATTACCGATATCGAGCTTCGAATACTTGTAGAGAATGCAATGAGACACTACTTTAAATTTTTTCGCATGAAAACGAAAGCTGCAAAAGCCGACGTCTCTTACATAATGTCAGGCATGTGGAAATCATCAGCCGAAAGACTTTTCTTATGGATCGGAGGATTTCGCCCTTCAGAACTGCTTAAGGTTTTAATACCTCAGCTGGACACGTTAACTGAACAACAAATTTCAGAAACTGGTAGTCTTAGGAAATCGTGTCTACAAGCAGAAGATGCTCTAAGACAAGGTATGGAAAAACTCCAGCAAAATCTATTTGAGAGCGTGGTGGCTGGTCAGCTGGCTGAAGGAAGTTATCCCCTACAGATGACTGCTGCAATGGAGAGATTAGAAGCACTCGTTAGCTTTGTGAACCAGGCTGACCATCTACGACAGGAAACATTGCAACAGATGTACAAAATTCTAACGACTCGGCAGTCTGCTCAAGGGCTTCTTACACTAGGAGAGTTTTTCCAACGACTCCGAGCATTGAGCTCGCTTTGGGGCAACCGTCCTTGTGAGCCTGCATAG 1089 43.99 MNSSSTKFYNPGRMGLYEPIHQIGMWGETFKINANLDTPPSLVIQAETKLENQSDDASLGSLGDPHMYDQEDTRRIDKIQRRLAQNREAARKSRLRKKAYIKQLETSRLKLIQLEQELEKARHQGLFSGSRFDANQLGFSGTTNSGISAFESEYEQWVEEQNRQISDLKTAVHANITDIELRILVENAMRHYFKFFRMKTKAAKADVSYIMSGMWKSSAERLFLWIGGFRPSELLKVLIPQLDTLTEQQISETGSLRKSCLQAEDALRQGMEKLQQNLFESVVAGQLAEGSYPLQMTAAMERLEALVSFVNQADHLRQETLQQMYKILTTRQSAQGLLTLGEFFQRLRALSSLWGNRPCEPA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4939660 4946672 + MC10g0598 Mch10g0715 677808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0715 362 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Mch10g0715 362 Gene3D - 77 126 - -
Mch10g0715 362 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0715 362 Coils Coil 97 124 - -
Mch10g0715 362 FunFam BZIP family transcription factor 77 126 - -
Mch10g0715 362 Pfam Seed dormancy control 164 239 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Mch10g0715 362 SUPERFAMILY Leucine zipper domain 79 120 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0715 362 Pfam bZIP transcription factor 77 111 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0715 362 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g0715 362 PANTHER TRANSCRIPTION FACTOR TGA9 2 361 - -
Mch10g0715 362 SMART brlzneu 74 156 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0715 Mch-Chr10:4939660 Mch4g2646 Mch-Chr4:26572233 1.71E-121 dispersed
Mch10g0715 Mch-Chr10:4939660 Mch3g0661 Mch-Chr3:11100891 3.84E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42457 PF14144 DOG1 4.80E-28 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0715 K14431 - csv:101208419 660.988