Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0718 ATGAAGCGGCTCAATGGGGCTCTGGTCTTGCTCTGGTTCATCGCGGTGGGCCAATTGTTTGCCAATGCCTCTGCAACTGTAGAAGCTACTGCTCTACATATTTTTCGAACAAATTTAGAAGATCCGAACAATGTTCTGCAGAGTTGGGACCCCACCCTCGTTAATCCATGTACTTGGTTTCATGTCACCTGCAACAATGAAAATAACATTATAAGAGTCGACCTTGGAAATGCTGGATTGTCTGGTAAATTGGTACCACAGCTTGGTCAACTCAAAAGTCTTCAATACTTGGAGCTTTATGGCAACAACATAAGTGGAGAGATTCCTGATGATCTTGGGAGTCTGGAAAACTTGGTGAGCCTAGACCTTTACTTGAACGGTTTAACTGGCTCGATTCCAGACACGTTGGGCAAGCTCACACAATTGCGTTTCCTTCGGCTCAACGACAACCACCTATCTGGATCGATACCGATGTCCTTGACCAATCTTTCTACCCTACAAGTCTTGGATCTATCAAACAACCTTTTATCCGGAAAAGTTCCAAATAATGGCTCATTTTCACTATTTACTCCCATCAGTTTCGCCAATAACTTGGATCTATGTGGTTTGGTAACTGGGAAACCCTGCCCTGGGTCTCCTCCTTTTTCTCCACCGCCACCCTTTGTTCCACAGTCAACATTTTCTTCCCATGAAGTAAACAATTCAAACGGAGTGATTGTTGGAGGAGTGGCTGCCGGTGCTGCATTACTTTTCGCGACTCCAGCAATTATATTTGCCTATTGGCATCGGAGGAGATCACAAGAACTATTCTTCGATGTCCCCGCTGAAGAAGATTCAGAGATCAGCTTGGGGCAGCTCAAAAGGTTTCCTCTTAGAGACTTGCAAGTTGCCACAGATAACTTCAGTAACAAAAACATTCTCGGCCGAGGTGGATTTGGTAAAGTGTACAGGGGACGCCTGGCTGATGGCTCATTAGTAGCAGTAAAAAGGCTCAAAGAAGAGCGTACACCAGGTGGAGAGTTGCAGTTCCAAACCGAAGTAGAGATGATTAGCATGGCTGTGCATCGGAATCTTCTGCGACTACACGGATTTTGTACAACATCAACCGAACGCCTTCTTGTTTATCCCTATATGGCTAATGGAAGTGTTGCTTCATGTTTAAGGGAGCGTCCGCAATCCGAACCTCCTCTCGACTGGCCAACTCGAAAGAAAGTTGCACTAGGCTCTGCAAGGGGGCTATCTTATCTACATGACGGATGTGATCCGAAAATCATCCATCGCGATGTGAAAGCTGCAAACATTCTATTGGATGAGGAGTTCGAGGCAATCGTTGGCGATTTTGGTCTGGCAAAACTAATGGACTACAAGGATACACACGTTACAACAGCGGTACGGGGTACCATTGGGCATATAGCCCCGGAGTATCTCTCCACTGGGAAGTCGTCGGAAAAGACCGATGTTTTTGGTTATGGCATTATGCTGTTGGAGCTCATAACTGGACAGAGAGCTTTCGATCTCGCTCGACTAGCAAACGATGAAGACGTAATGCTGCTTGATTGGGTGAAAGGGCTTCTGAAAGAGAAGAAGTTGGAGATGTTGGTTGATCCTGATCTGAAGGAAAATTACGACGAAATTGAAGTTGAGCAAATAATCCAAGTAGCTCTTCTCTGCACGCAGAGCTCGCCCATGGAGCGGCCGAAGATGTCGGATGTCGTGAGAATGCTCGACGGAGACGGGCTGACGGAGAGATGGGAGGAATGGCAGAGAGTGGAGGTGGTGTACCATGAAACAGAATTGGCTTCTTCTCAAACTTCTGAATGGATGATCGATTCTACAGAAAATGTTCGTGCTTTTGAATTATCGGGTCCTAGGTGA 1875 46.24 MKRLNGALVLLWFIAVGQLFANASATVEATALHIFRTNLEDPNNVLQSWDPTLVNPCTWFHVTCNNENNIIRVDLGNAGLSGKLVPQLGQLKSLQYLELYGNNISGEIPDDLGSLENLVSLDLYLNGLTGSIPDTLGKLTQLRFLRLNDNHLSGSIPMSLTNLSTLQVLDLSNNLLSGKVPNNGSFSLFTPISFANNLDLCGLVTGKPCPGSPPFSPPPPFVPQSTFSSHEVNNSNGVIVGGVAAGAALLFATPAIIFAYWHRRRSQELFFDVPAEEDSEISLGQLKRFPLRDLQVATDNFSNKNILGRGGFGKVYRGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLHGFCTTSTERLLVYPYMANGSVASCLRERPQSEPPLDWPTRKKVALGSARGLSYLHDGCDPKIIHRDVKAANILLDEEFEAIVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDEDVMLLDWVKGLLKEKKLEMLVDPDLKENYDEIEVEQIIQVALLCTQSSPMERPKMSDVVRMLDGDGLTERWEEWQRVEVVYHETELASSQTSEWMIDSTENVRAFELSGPR 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4959368 4964236 - MC10g0601 Mch10g0718 677811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0718 624 SUPERFAMILY Protein kinase-like (PK-like) 280 575 IPR011009 -
Mch10g0718 624 ProSiteProfiles Protein kinase domain profile. 301 588 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0718 624 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Mch10g0718 624 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Mch10g0718 624 Gene3D Ribonuclease Inhibitor 25 211 IPR032675 -
Mch10g0718 624 FunFam Somatic embryogenesis receptor-like kinase 1 378 595 - -
Mch10g0718 624 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524(InterPro)
Mch10g0718 624 Gene3D Transferase(Phosphotransferase) domain 1 378 595 - -
Mch10g0718 624 FunFam Somatic embryogenesis receptor kinase 1 24 211 - -
Mch10g0718 624 Pfam Protein tyrosine and serine/threonine kinase 304 575 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch10g0718 624 Pfam Leucine Rich Repeat 141 163 IPR001611 GO:0005515(InterPro)
Mch10g0718 624 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
Mch10g0718 624 Pfam Leucine Rich Repeat 166 183 IPR001611 GO:0005515(InterPro)
Mch10g0718 624 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515(InterPro)
Mch10g0718 624 SMART serkin_6 301 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0718 624 SUPERFAMILY L domain-like 28 192 - -
Mch10g0718 624 FunFam Somatic embryogenesis receptor kinase 1 270 377 - -
Mch10g0718 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch10g0718 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 624 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0330 Mch-Chr10:2190504 Mch10g0718 Mch-Chr10:4959368 5.80E-221 dispersed
Mch10g0718 Mch-Chr10:4959368 Mch8g0035 Mch-Chr8:204411 2.11E-168 dispersed
Mch7g0035 Mch-Chr7:300197 Mch10g0718 Mch-Chr10:4959368 5.40E-29 dispersed
Mch7g0036 Mch-Chr7:308765 Mch10g0718 Mch-Chr10:4959368 4.26E-29 dispersed
Mch10g0718 Mch-Chr10:4959368 Mch4g2400 Mch-Chr4:25103365 1.92E-167 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77007 PF07714 PK_Tyr_Ser-Thr 1.00E-43 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0718 K13418 - csv:101208905 1081.24