Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0719 ATGAGCGGCCACAAGCGAAACTCCACCGCCGCCGCCGTCAGTCCCGTTGGCAGCCCGACCTCCGGCGACATCTCCGACAGCTCCACGAAGGAGCAGGACCGGTTCCTGCCGATCGCCAACGTGAGCCGGATCATGAAAAAATCCCTTCCGGCGAACGCCAAGATCTCGAAAGAGGCCAAAGAGACCGTCCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGAGGGAGAAGCGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTAGGGTTTGAAAATTACGTCGCGCCTTTGAAGATTTATCTCAATAAATACAGAGAAACAGAGGAGGAGAAACATTCCTTCGCCAGACAGGACGATCAGGCGCCGCCGCCTGGTTCCGCCGAACAAATCATCGGGGGAAAATCCGCCAGTTCGGTGATGGATTTTCAGAATTTCAATTCCGGGTTTTATTCGCTGGGGAACCAAAATCAGACGGCTCAGAAGAGCTTCAACATAATCGACGGCGTGGGATTTGGGGAAAATTTTAGAGGTTTCAATGTGAGTGGCGTCCATGAAAATGGAGAAGGAAATCGAGGTCGAGCCATGGCGGCTCATCTTCAACAGAGCTCCGGTTGG 657 54.34 MSGHKRNSTAAAVSPVGSPTSGDISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVAPLKIYLNKYRETEEEKHSFARQDDQAPPPGSAEQIIGGKSASSVMDFQNFNSGFYSLGNQNQTAQKSFNIIDGVGFGENFRGFNVSGVHENGEGNRGRAMAAHLQQSSGW 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 4974682 4975338 + MC10g0602 Mch10g0719 677812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0719 219 FunFam Nuclear transcription factor Y subunit B-3 24 146 - -
Mch10g0719 219 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
Mch10g0719 219 ProSitePatterns NF-YB/HAP3 subunit signature. 66 82 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0719 219 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Mch10g0719 219 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Mch10g0719 219 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Mch10g0719 219 MobiDBLite consensus disorder prediction 124 145 - -
Mch10g0719 219 MobiDBLite consensus disorder prediction 1 32 - -
Mch10g0719 219 Gene3D Histone, subunit A 22 150 IPR009072 GO:0046982(InterPro)
Mch10g0719 219 SUPERFAMILY Histone-fold 32 136 IPR009072 GO:0046982(InterPro)
Mch10g0719 219 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 20 161 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0719 Mch-Chr10:4974682 Mch2g0464 Mch-Chr2:3371249 9.71E-58 dispersed
Mch10g0719 Mch-Chr10:4974682 Mch9g0769 Mch-Chr9:5755501 1.54E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42459 PF00808 CBFD_NFYB_HMF 6.40E-27 CL0012 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0719 K08065 - csv:101214273 387.497