Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g0745 | ATGCCTATGGAGTTGGATAATTCCTCCACCGCTTCCGGCGAAGCCAGTATCTCCTCCTCCGGGAACCAACCTCCGCCGCCCAAATCCAACGCCAAGAAGAAGCGCAATTTACCCGGAATGCCAGATCCGGATGCAGAGGTGATTGCTCTGTCTCCGAAGGCCCTTTTGGCCACAAATCGATTTGTGTGTGAAATTTGCAACAAAGGGTTTCAAAGGGATCAGAATCTGCAACTCCACCGGCGAGGTCACAATCTGCCGTGGAAACTCCGGCAGCGGACGGGGAAGGAGGTGAAGAAGAAGGTGTACGTCTGCCCGGAGCCGTCGTGCGTTCACCACCACCCGACGAGGGCGCTCGGCGATCTCACCGGAATAAAGAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCAGTCAAGTCCGATTGGAAGGCCCATTTCAAGATTTGTGGCACCAGAGAGTACAAATGTGACTGCGAAACTGTGTTTTCAAGAAGAGATAGCTTCATCACTCACAGAGCCTTCTGCGATGTGTTGACGAAGGAGACCGCCGCCGGAAGTCCATCGCCGGCGGCGGCGGAGAATCCTAATTTGGAGTCCGATCCCAAAGTTCAGCCACCGGGTAGTTCATCTCCACCACCTTCTGCTCCTCCTCCTCCTCCCGCCGCCGCCCCGATAGTCCCTCCTCCATCAACTGACGCGATATCATCAATTCAGAATAAAGCCATGGATTCGCCGGAAAATCGCCCGCCGCAGTTAGGCGAGCCACCGATCAGAATTGCCCTTTCTGGCAGCTCCGGCGGTAGTACCACCACAATCGGCAGCACCAATGCTACAGTATTGGCTAGCTTGTTTGCTTCCTCCGCCGCATCGCTGAGCTTACAGCCGCCGCAGCCGCCGGCGTTTAGCGACTTATTACGAGCCATGACGCGCCCCGATCGTCCGGCCGAAATTGCGGCGCCGCTAGTTTTTGAACCTCTGTCTCTTTGCCTATCGACCCACAATGGGTCGTCGCTTTTCGGGACCGGAATCCAAGAGCGCCGCCCATATGCGCCGCCGCCGCAGCCGGCCATGTCCGCCACAGGGCTCCTGCAGAAGGCCGCTCAAATAGGTGCTGCGGCGGCGAGCACATCGGTGTTTCGTGGCCTTGGTCTTTCGTCTTCCTCTTCTTCCGCACAACAGGGGAGTTTGTAA | 1221 | 56.84 | MPMELDNSSTASGEASISSSGNQPPPPKSNAKKKRNLPGMPDPDAEVIALSPKALLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTGKEVKKKVYVCPEPSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVKSDWKAHFKICGTREYKCDCETVFSRRDSFITHRAFCDVLTKETAAGSPSPAAAENPNLESDPKVQPPGSSSPPPSAPPPPPAAAPIVPPPSTDAISSIQNKAMDSPENRPPQLGEPPIRIALSGSSGGSTTTIGSTNATVLASLFASSAASLSLQPPQPPAFSDLLRAMTRPDRPAEIAAPLVFEPLSLCLSTHNGSSLFGTGIQERRPYAPPPQPAMSATGLLQKAAQIGAAAASTSVFRGLGLSSSSSSAQQGSL | 406 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5141856 | 5144958 | + | MC10g0623 | Mch10g0745 | 677838 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g0745 | 406 | SUPERFAMILY | beta-beta-alpha zinc fingers | 60 | 157 | IPR036236 | - | |
Mch10g0745 | 406 | Gene3D | Classic Zinc Finger | 115 | 194 | - | - | |
Mch10g0745 | 406 | FunFam | protein indeterminate-domain 12-like | 40 | 108 | - | - | |
Mch10g0745 | 406 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Mch10g0745 | 406 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 18 | 395 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Mch10g0745 | 406 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 98 | 132 | - | - | |
Mch10g0745 | 406 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 83 | IPR013087 | - | |
Mch10g0745 | 406 | MobiDBLite | consensus disorder prediction | 241 | 255 | - | - | |
Mch10g0745 | 406 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 115 | 194 | - | - | |
Mch10g0745 | 406 | Gene3D | Classic Zinc Finger | 61 | 106 | - | - | |
Mch10g0745 | 406 | MobiDBLite | consensus disorder prediction | 194 | 279 | - | - | |
Mch10g0745 | 406 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 163 | 198 | - | - | |
Mch10g0745 | 406 | MobiDBLite | consensus disorder prediction | 215 | 237 | - | - | |
Mch10g0745 | 406 | SMART | c2h2final6 | 61 | 83 | IPR013087 | - | |
Mch10g0745 | 406 | SMART | c2h2final6 | 137 | 157 | IPR013087 | - | |
Mch10g0745 | 406 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Mch10g0745 | 406 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
Mch10g0745 | 406 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 136 | 160 | - | - | |
Mch10g0745 | 406 | Pfam | Zinc-finger of C2H2 type | 61 | 83 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0745 | Mch-Chr10:5141856 | Mch1g1490 | Mch-Chr1:16406121 | 3.24E-160 | dispersed | |
Mch1g1488 | Mch-Chr1:16394687 | Mch10g0745 | Mch-Chr10:5141856 | 3.52E-139 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42463 | PF00096 | zf-C2H2 | 0.0039 | CL0361 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g0745 | K25869 | - | csv:101215476 | 543.117 |