Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0745 ATGCCTATGGAGTTGGATAATTCCTCCACCGCTTCCGGCGAAGCCAGTATCTCCTCCTCCGGGAACCAACCTCCGCCGCCCAAATCCAACGCCAAGAAGAAGCGCAATTTACCCGGAATGCCAGATCCGGATGCAGAGGTGATTGCTCTGTCTCCGAAGGCCCTTTTGGCCACAAATCGATTTGTGTGTGAAATTTGCAACAAAGGGTTTCAAAGGGATCAGAATCTGCAACTCCACCGGCGAGGTCACAATCTGCCGTGGAAACTCCGGCAGCGGACGGGGAAGGAGGTGAAGAAGAAGGTGTACGTCTGCCCGGAGCCGTCGTGCGTTCACCACCACCCGACGAGGGCGCTCGGCGATCTCACCGGAATAAAGAAGCACTTCTGCCGGAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCAGTCAAGTCCGATTGGAAGGCCCATTTCAAGATTTGTGGCACCAGAGAGTACAAATGTGACTGCGAAACTGTGTTTTCAAGAAGAGATAGCTTCATCACTCACAGAGCCTTCTGCGATGTGTTGACGAAGGAGACCGCCGCCGGAAGTCCATCGCCGGCGGCGGCGGAGAATCCTAATTTGGAGTCCGATCCCAAAGTTCAGCCACCGGGTAGTTCATCTCCACCACCTTCTGCTCCTCCTCCTCCTCCCGCCGCCGCCCCGATAGTCCCTCCTCCATCAACTGACGCGATATCATCAATTCAGAATAAAGCCATGGATTCGCCGGAAAATCGCCCGCCGCAGTTAGGCGAGCCACCGATCAGAATTGCCCTTTCTGGCAGCTCCGGCGGTAGTACCACCACAATCGGCAGCACCAATGCTACAGTATTGGCTAGCTTGTTTGCTTCCTCCGCCGCATCGCTGAGCTTACAGCCGCCGCAGCCGCCGGCGTTTAGCGACTTATTACGAGCCATGACGCGCCCCGATCGTCCGGCCGAAATTGCGGCGCCGCTAGTTTTTGAACCTCTGTCTCTTTGCCTATCGACCCACAATGGGTCGTCGCTTTTCGGGACCGGAATCCAAGAGCGCCGCCCATATGCGCCGCCGCCGCAGCCGGCCATGTCCGCCACAGGGCTCCTGCAGAAGGCCGCTCAAATAGGTGCTGCGGCGGCGAGCACATCGGTGTTTCGTGGCCTTGGTCTTTCGTCTTCCTCTTCTTCCGCACAACAGGGGAGTTTGTAA 1221 56.84 MPMELDNSSTASGEASISSSGNQPPPPKSNAKKKRNLPGMPDPDAEVIALSPKALLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTGKEVKKKVYVCPEPSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVKSDWKAHFKICGTREYKCDCETVFSRRDSFITHRAFCDVLTKETAAGSPSPAAAENPNLESDPKVQPPGSSSPPPSAPPPPPAAAPIVPPPSTDAISSIQNKAMDSPENRPPQLGEPPIRIALSGSSGGSTTTIGSTNATVLASLFASSAASLSLQPPQPPAFSDLLRAMTRPDRPAEIAAPLVFEPLSLCLSTHNGSSLFGTGIQERRPYAPPPQPAMSATGLLQKAAQIGAAAASTSVFRGLGLSSSSSSAQQGSL 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5141856 5144958 + MC10g0623 Mch10g0745 677838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0745 406 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Mch10g0745 406 Gene3D Classic Zinc Finger 115 194 - -
Mch10g0745 406 FunFam protein indeterminate-domain 12-like 40 108 - -
Mch10g0745 406 MobiDBLite consensus disorder prediction 1 29 - -
Mch10g0745 406 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 395 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch10g0745 406 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Mch10g0745 406 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Mch10g0745 406 MobiDBLite consensus disorder prediction 241 255 - -
Mch10g0745 406 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Mch10g0745 406 Gene3D Classic Zinc Finger 61 106 - -
Mch10g0745 406 MobiDBLite consensus disorder prediction 194 279 - -
Mch10g0745 406 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 163 198 - -
Mch10g0745 406 MobiDBLite consensus disorder prediction 215 237 - -
Mch10g0745 406 SMART c2h2final6 61 83 IPR013087 -
Mch10g0745 406 SMART c2h2final6 137 157 IPR013087 -
Mch10g0745 406 MobiDBLite consensus disorder prediction 1 45 - -
Mch10g0745 406 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Mch10g0745 406 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 136 160 - -
Mch10g0745 406 Pfam Zinc-finger of C2H2 type 61 83 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0745 Mch-Chr10:5141856 Mch1g1490 Mch-Chr1:16406121 3.24E-160 dispersed
Mch1g1488 Mch-Chr1:16394687 Mch10g0745 Mch-Chr10:5141856 3.52E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42463 PF00096 zf-C2H2 0.0039 CL0361 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0745 K25869 - csv:101215476 543.117