Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0751 ATGGAATGGGTTCAGGAAATGCCCCTCAAATTGACCCCTCAAATTTGTTTCCATGACATCGAAAATGCCTCTCTTGTCTCCTCCGATGACTTCTTCGTCGACCAACTTCTCGATTTGTCTAACCACGACCAATTTGTCGACCAACAGGATGACGAAATCCTCGACGACGACGACGACGACAAGGCCTCCGGCTCCATTTCTGTTTCCGCCGCCTACGATTTTCATCAGAACTCCTTAATTTCCGACCTTCCTTCTCTGCCCTCCACCGAACTTAGCGTTCCGGCGGATGATTTGGCGAGCCTCGAATGGTTGTCCCATTTCGTTGAGGATTCTTTCTCCGGATTCTCCCCTCCCTTCCCCTCCGATGGAATTTCTGCCGCCGCGGTGAAACCGGAAGCCAACGGTTCCCTTTCGCCGCCTCGGCCCTGTTTCAAAACCCCTGTTCCGGTCAAGGCTCGGAGCAAGCGGACAAGAAACGGCGGTCGGGTTTGGTGCCTCCGCTCGCCGTCGCTCACTGAGTCATCTTCCAGTTCGACGACGTCGTCTTCCTCTTCGTCGCCGGCGAGTCCTTGGCTTTTTCCCCAGAATTCCGACCACTTCGAACCGGAAATTCCGGCCTCGAGGAAAACGAGGAGAAGGTTGCCGGCGGATAAAGCCAGAGCGTGCGGGGCCCACGCCCAGCCGGTTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCTCAGTGGAGAACCGGCCCCCTGGGGGCCAAAACTCTCTGCAACGCTTGCGGCGTCCGGTTCAAATCGGGTCGGCTTTTACCCGAATACCGACCCGCCTGCAGTCCGACTTTCTCCAGCGAATTGCACTCCAACCACCACCGTAAAGTCCTCGAGATGCGGCGGAACAAAGAAACCGCCGGAGCATCCGATGGTGTCCCGGCTTCTCCGGCCCTGCCGAGTTTTTGA 948 57.28 MEWVQEMPLKLTPQICFHDIENASLVSSDDFFVDQLLDLSNHDQFVDQQDDEILDDDDDDKASGSISVSAAYDFHQNSLISDLPSLPSTELSVPADDLASLEWLSHFVEDSFSGFSPPFPSDGISAAAVKPEANGSLSPPRPCFKTPVPVKARSKRTRNGGRVWCLRSPSLTESSSSSTTSSSSSSPASPWLFPQNSDHFEPEIPASRKTRRRLPADKARACGAHAQPVRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRNKETAGASDGVPASPALPSF 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5208041 5209922 - MC10g0629 Mch10g0751 677844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0751 315 SMART GATA_3 226 280 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0751 315 MobiDBLite consensus disorder prediction 202 217 - -
Mch10g0751 315 CDD ZnF_GATA 231 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0751 315 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 230 289 - -
Mch10g0751 315 MobiDBLite consensus disorder prediction 169 193 - -
Mch10g0751 315 PIRSF Txn_fac_GATA_plant 14 308 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Mch10g0751 315 MobiDBLite consensus disorder prediction 131 156 - -
Mch10g0751 315 Gene3D - 223 299 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch10g0751 315 PANTHER GATA TRANSCRIPTION FACTOR 30 298 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Mch10g0751 315 MobiDBLite consensus disorder prediction 169 217 - -
Mch10g0751 315 Pfam GATA zinc finger 232 266 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0751 315 ProSiteProfiles GATA-type zinc finger domain profile. 226 262 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0751 315 FunFam GATA transcription factor 223 306 - -
Mch10g0751 315 ProSitePatterns GATA-type zinc finger domain. 232 257 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0751 Mch-Chr10:5208041 Mch2g1067 Mch-Chr2:7179548 1.07E-49 dispersed
Mch8g1973 Mch-Chr8:21694500 Mch10g0751 Mch-Chr10:5208041 1.37E-20 transposed
Mch1g1503 Mch-Chr1:16493081 Mch10g0751 Mch-Chr10:5208041 2.59E-09 wgd
Mch1g1560 Mch-Chr1:16857778 Mch10g0751 Mch-Chr10:5208041 3.87E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42466 PF00320 GATA 4.00E-16 CL0167 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0751 - - - 0.0