Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0751 ATGGAATGGGTTCAGGAAATGCCCCTCAAATTGACCCCTCAAATTTGTTTCCATGACATCGAAAATGCCTCTCTTGTCTCCTCCGATGACTTCTTCGTCGACCAACTTCTCGATTTGTCTAACCACGACCAATTTGTCGACCAACAGGATGACGAAATCCTCGACGACGACGACGACGACAAGGCCTCCGGCTCCATTTCTGTTTCCGCCGCCTACGATTTTCATCAGAACTCCTTAATTTCCGACCTTCCTTCTCTGCCCTCCACCGAACTTAGCGTTCCGGCGGATGATTTGGCGAGCCTCGAATGGTTGTCCCATTTCGTTGAGGATTCTTTCTCCGGATTCTCCCCTCCCTTCCCCTCCGATGGAATTTCTGCCGCCGCGGTGAAACCGGAAGCCAACGGTTCCCTTTCGCCGCCTCGGCCCTGTTTCAAAACCCCTGTTCCGGTCAAGGCTCGGAGCAAGCGGACAAGAAACGGCGGTCGGGTTTGGTGCCTCCGCTCGCCGTCGCTCACTGAGTCATCTTCCAGTTCGACGACGTCGTCTTCCTCTTCGTCGCCGGCGAGTCCTTGGCTTTTTCCCCAGAATTCCGACCACTTCGAACCGGAAATTCCGGCCTCGAGGAAAACGAGGAGAAGGTTGCCGGCGGATAAAGCCAGAGCGTGCGGGGCCCACGCCCAGCCGGTTCGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCTCAGTGGAGAACCGGCCCCCTGGGGGCCAAAACTCTCTGCAACGCTTGCGGCGTCCGGTTCAAATCGGGTCGGCTTTTACCCGAATACCGACCCGCCTGCAGTCCGACTTTCTCCAGCGAATTGCACTCCAACCACCACCGTAAAGTCCTCGAGATGCGGCGGAACAAAGAAACCGCCGGAGCATCCGATGGTGTCCCGGCTTCTCCGGCCCTGCCGAGTTTTTGA 948 57.28 MEWVQEMPLKLTPQICFHDIENASLVSSDDFFVDQLLDLSNHDQFVDQQDDEILDDDDDDKASGSISVSAAYDFHQNSLISDLPSLPSTELSVPADDLASLEWLSHFVEDSFSGFSPPFPSDGISAAAVKPEANGSLSPPRPCFKTPVPVKARSKRTRNGGRVWCLRSPSLTESSSSSTTSSSSSSPASPWLFPQNSDHFEPEIPASRKTRRRLPADKARACGAHAQPVRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRNKETAGASDGVPASPALPSF 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5208041 5209922 - MC10g0629 Mch10g0751 677844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0751 315 SMART GATA_3 226 280 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0751 315 MobiDBLite consensus disorder prediction 202 217 - -
Mch10g0751 315 CDD ZnF_GATA 231 279 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0751 315 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 230 289 - -
Mch10g0751 315 MobiDBLite consensus disorder prediction 169 193 - -
Mch10g0751 315 PIRSF Txn_fac_GATA_plant 14 308 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Mch10g0751 315 MobiDBLite consensus disorder prediction 131 156 - -
Mch10g0751 315 Gene3D - 223 299 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch10g0751 315 PANTHER GATA TRANSCRIPTION FACTOR 30 298 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Mch10g0751 315 MobiDBLite consensus disorder prediction 169 217 - -
Mch10g0751 315 Pfam GATA zinc finger 232 266 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0751 315 ProSiteProfiles GATA-type zinc finger domain profile. 226 262 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0751 315 FunFam GATA transcription factor 223 306 - -
Mch10g0751 315 ProSitePatterns GATA-type zinc finger domain. 232 257 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0751 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0751 Mch-Chr10:5208041 Mch2g1067 Mch-Chr2:7179548 1.07E-49 dispersed
Mch8g1973 Mch-Chr8:21694500 Mch10g0751 Mch-Chr10:5208041 1.37E-20 transposed
Mch1g1503 Mch-Chr1:16493081 Mch10g0751 Mch-Chr10:5208041 2.59E-09 wgd
Mch1g1560 Mch-Chr1:16857778 Mch10g0751 Mch-Chr10:5208041 3.87E-49 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g0323 . 115 399 C2C2-Gata Transcription Factor Family AT5G25830 55.1 6.5e-71 264.6
Mch11g0766 . 83 352 C2C2-Gata Transcription Factor Family AT5G25830 52.0 1.7e-66 250.0
Mch8g1192 . 68 241 C2C2-Gata Transcription Factor Family AT2G45050 50.2 4.1e-44 175.3
Mch10g0751 . 27 316 C2C2-Gata Transcription Factor Family AT5G66320 51.0 7.1e-65 244.6
Mch1g1560 . 104 269 C2C2-Gata Transcription Factor Family AT4G36240 52.8 4.3e-40 161.8
Mch11g0766 . 71 351 C2C2-Gata Transcription Factor Family AT4G32890 51.0 6.9e-59 224.6
Mch10g1588 . 1 516 C2C2-Gata Transcription Factor Family AT4G17570 53.7 5.8e-135 478.0
Mch6g2117 . 1 518 C2C2-Gata Transcription Factor Family AT4G17570 52.4 3.2e-133 472.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42466 PF00320 GATA 4.00E-16 CL0167 Mch TF