Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g0757 | ATGGCCGGTTTTTTCCAATTAGGCGGCGGAACAGGACCGAGCCAGCTCCCGACCACCGCCAGCACCGCCGCGGACGGGTTATTTTGGTACAAAAATCATCATGAGAGCTTGGAAGTATGGCAGCAGCAGCAGGAAGGGGGGTTTGTTAATTACTCGCCGGTGGTGGGTCCGGGGGTGAGCTCCGGCGATGAATCGCCGCCGAGATCGTCGCTGGTGATGGTGAGATCCGGGCGGGGAGGAGGGCAGGTGATCAGCTGCCAAGATTGTGGGAATCAAGCCAAGAAAGATTGCCTTCATATGCGGTGTAGAACTTGCTGCAAAAGCCGCGGCTTCGACTGCGAAACGCACGTCAAAAGCACCTGGATCCCCGCCTCCAAACGTCGCGACCGCCAACTCCGCAGCCTCACTAACCCCAAACGACTCCGAGACGACACGAATTCACCTTCTACACTTCCGTCAGGGTTGGAAATGGGGAATTTTCCGGCGGAGGTGAGCTCATCGGCGGTGTTTCGGTGCGTCCGAATGACGGCGTTGGACGAAACGGAGGAGCAATATGCATATCAAACGGCGGTGAATATCGGAGGCCATATCTTCAAGGGCATTCTCTACGACCACGGCCCTGAACAACCCAATTCCTCCGCCGTCTCCACCGCCCCAATCCCCGCCGGCGCCGTCCATGAATTCCCGCCCATCAGCGCCGCATTGCTCGATCCTCCTCCGCCGTACCCTACTCCTCTCAACGCCTACATCGCCGCCGCCGGTACGCAATTTTTTCTTCCCCCAACATCTTAG | 792 | 58.33 | MAGFFQLGGGTGPSQLPTTASTAADGLFWYKNHHESLEVWQQQQEGGFVNYSPVVGPGVSSGDESPPRSSLVMVRSGRGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWIPASKRRDRQLRSLTNPKRLRDDTNSPSTLPSGLEMGNFPAEVSSSAVFRCVRMTALDETEEQYAYQTAVNIGGHIFKGILYDHGPEQPNSSAVSTAPIPAGAVHEFPPISAALLDPPPPYPTPLNAYIAAAGTQFFLPPTS | 263 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5285591 | 5287625 | + | MC10g0634 | Mch10g0757 | 677850 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g0757 | 263 | MobiDBLite | consensus disorder prediction | 128 | 158 | - | - | |
Mch10g0757 | 263 | NCBIfam | putative zinc finger domain, LRP1 type | 85 | 127 | IPR006510 | - | |
Mch10g0757 | 263 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 257 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) | |
Mch10g0757 | 263 | Pfam | Domain of unknown function (DUF702) | 84 | 208 | - | - | |
Mch10g0757 | 263 | NCBIfam | LRP1 C-terminal domain | 160 | 207 | IPR006511 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0757 | Mch-Chr10:5285591 | Mch8g0817 | Mch-Chr8:5797384 | 5.92E-57 | dispersed | |
Mch1g1555 | Mch-Chr1:16831414 | Mch10g0757 | Mch-Chr10:5285591 | 1.76E-75 | wgd | |
Mch10g0757 | Mch-Chr10:5285591 | Mch11g0151 | Mch-Chr11:953358 | 6.11E-62 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42468 | PF05142 | DUF702 | 6.70E-54 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g0757 | K27807 | - | csv:101216097 | 303.523 |