Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0790 ATGTCGCTTAAAAGTTTTGTTAGAGAGCTGCGAGAGATGAAAGATGGAATTGGAAGCATTTCAAAGCGAGGAGAAGAAGGGGGGACTGGGAGGCATTGGCGAAACCGCACGATGTCGCATATTGCACCCGATCAAGAACCTTCCCCATTGGAGATAATTCAGCAAGGCCGGTGGGCAAATCTGCCCCCTGAATTGCTTTTAGACATCATCCGGAGAGTGGAAGAGAGTGAAACCTCATGGCCTGCTCGAGCTGTAGTTGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACACCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCGTTAAAGCAGCCTGGACCTCGGGAGTCTCCATTTCAGTGCTTTATAAGAAGGGACAGAGCAACTTCGACTTACCTTCTGTACTTCGGTTTGGTACCTTTGGAGGATGAGAAGGATAAATTGTTGTTAGCAGCCAAGAGGGTCAGACGAGCGGCTGGCACCGACTTCATCATATCTTTAGCTGCCGATGATTTTTCTCGAGCAAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGCACGAAGTTCTCAATTTATGACAGCCAACCTCCTTGTGACCCTGCAGCTTGGCAAAATAGTCGATCGAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGAGTACCTGCCTGTAACTACAGTGTAGGCACAATTTCTTATGAACTTAATGTTCTTCGTACTAGAGGTCCTCGGAGAATGCAGTGCATCATGCAGTCGATTCCAGTCTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCTACATCGTTCATATACTCTATCGACGACCACCTTTCTTCCACATCCAATTCTATAAGAAAGGATCCATCCAAGGACTTTGGCTCAAAGAGCCTATCAGAACCAGCAGCAGTTCAGGGGTCGGATGAATCATTGGTACTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGCCGTGTGACTGTGGCATCTGTTAAGAACTTCCAACTCGTTGCAGCTGTTGATCAATCCCATAATGTTTCGGTGGAAGAGCAAGAGAAGGTACTTCTTCAGTTCGGAAAAATTGGAAAAGACATCTTCACCATGGATTACCACTACCCGCTCTCTGCCTTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA 1251 47.16 MSLKSFVRELREMKDGIGSISKRGEEGGTGRHWRNRTMSHIAPDQEPSPLEIIQQGRWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGLVPLEDEKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAAWQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCIMQSIPVSSIQEGGTAPTPTSFIYSIDDHLSSTSNSIRKDPSKDFGSKSLSEPAAVQGSDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVLLQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5496465 5504860 - MC10g0659 Mch10g0790 677883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0790 416 Pfam Tub family 119 411 IPR000007 -
Mch10g0790 416 Pfam F-box-like 58 101 IPR001810 GO:0005515(InterPro)
Mch10g0790 416 SUPERFAMILY Tubby C-terminal domain-like 107 416 IPR025659 -
Mch10g0790 416 Gene3D Tubby Protein; Chain A 116 416 IPR025659 -
Mch10g0790 416 MobiDBLite consensus disorder prediction 294 314 - -
Mch10g0790 416 SUPERFAMILY F-box domain 52 102 IPR036047 GO:0005515(InterPro)
Mch10g0790 416 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Mch10g0790 416 ProSitePatterns Tub family signature 2. 401 416 IPR018066 -
Mch10g0790 416 PANTHER TUBBY-RELATED 42 415 - -
Mch10g0790 416 Gene3D - 52 106 - -
Mch10g0790 416 FunFam Tubby-like F-box protein 115 416 - -
Mch10g0790 416 CDD F-box_AtTLP-like 58 102 - -
Mch10g0790 416 PRINTS Tubby superfamily signature 373 392 IPR000007 -
Mch10g0790 416 PRINTS Tubby superfamily signature 189 213 IPR000007 -
Mch10g0790 416 PRINTS Tubby superfamily signature 394 416 IPR000007 -
Mch10g0790 416 PRINTS Tubby superfamily signature 173 189 IPR000007 -
Mch10g0790 416 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Mch10g0790 416 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Mch10g0790 416 PRINTS Tubby superfamily signature 238 265 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0790 Mch-Chr10:5496465 Mch11g0176 Mch-Chr11:1149384 3.14E-185 dispersed
Mch10g0513 Mch-Chr10:3356046 Mch10g0790 Mch-Chr10:5496465 2.30E-158 transposed
Mch4g1886 Mch-Chr4:21539841 Mch10g0790 Mch-Chr10:5496465 9.03E-154 transposed
Mch1g1508 Mch-Chr1:16517309 Mch10g0790 Mch-Chr10:5496465 1.90E-220 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42471 PF01167 Tub 2.40E-106 CL0395 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0790 K19600 - csv:101205595 774.237