Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g0790 | ATGTCGCTTAAAAGTTTTGTTAGAGAGCTGCGAGAGATGAAAGATGGAATTGGAAGCATTTCAAAGCGAGGAGAAGAAGGGGGGACTGGGAGGCATTGGCGAAACCGCACGATGTCGCATATTGCACCCGATCAAGAACCTTCCCCATTGGAGATAATTCAGCAAGGCCGGTGGGCAAATCTGCCCCCTGAATTGCTTTTAGACATCATCCGGAGAGTGGAAGAGAGTGAAACCTCATGGCCTGCTCGAGCTGTAGTTGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACACCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCGTTAAAGCAGCCTGGACCTCGGGAGTCTCCATTTCAGTGCTTTATAAGAAGGGACAGAGCAACTTCGACTTACCTTCTGTACTTCGGTTTGGTACCTTTGGAGGATGAGAAGGATAAATTGTTGTTAGCAGCCAAGAGGGTCAGACGAGCGGCTGGCACCGACTTCATCATATCTTTAGCTGCCGATGATTTTTCTCGAGCAAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGCACGAAGTTCTCAATTTATGACAGCCAACCTCCTTGTGACCCTGCAGCTTGGCAAAATAGTCGATCGAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGAGTACCTGCCTGTAACTACAGTGTAGGCACAATTTCTTATGAACTTAATGTTCTTCGTACTAGAGGTCCTCGGAGAATGCAGTGCATCATGCAGTCGATTCCAGTCTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCTACATCGTTCATATACTCTATCGACGACCACCTTTCTTCCACATCCAATTCTATAAGAAAGGATCCATCCAAGGACTTTGGCTCAAAGAGCCTATCAGAACCAGCAGCAGTTCAGGGGTCGGATGAATCATTGGTACTTAAAAACAAGGCACCGAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGCCGTGTGACTGTGGCATCTGTTAAGAACTTCCAACTCGTTGCAGCTGTTGATCAATCCCATAATGTTTCGGTGGAAGAGCAAGAGAAGGTACTTCTTCAGTTCGGAAAAATTGGAAAAGACATCTTCACCATGGATTACCACTACCCGCTCTCTGCCTTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA | 1251 | 47.16 | MSLKSFVRELREMKDGIGSISKRGEEGGTGRHWRNRTMSHIAPDQEPSPLEIIQQGRWANLPPELLLDIIRRVEESETSWPARAVVVFCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGLVPLEDEKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAAWQNSRSSRRFRSKQVSPRVPACNYSVGTISYELNVLRTRGPRRMQCIMQSIPVSSIQEGGTAPTPTSFIYSIDDHLSSTSNSIRKDPSKDFGSKSLSEPAAVQGSDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVLLQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE | 416 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 5496465 | 5504860 | - | MC10g0659 | Mch10g0790 | 677883 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g0790 | 416 | Pfam | Tub family | 119 | 411 | IPR000007 | - | |
Mch10g0790 | 416 | Pfam | F-box-like | 58 | 101 | IPR001810 | GO:0005515(InterPro) | |
Mch10g0790 | 416 | SUPERFAMILY | Tubby C-terminal domain-like | 107 | 416 | IPR025659 | - | |
Mch10g0790 | 416 | Gene3D | Tubby Protein; Chain A | 116 | 416 | IPR025659 | - | |
Mch10g0790 | 416 | MobiDBLite | consensus disorder prediction | 294 | 314 | - | - | |
Mch10g0790 | 416 | SUPERFAMILY | F-box domain | 52 | 102 | IPR036047 | GO:0005515(InterPro) | |
Mch10g0790 | 416 | ProSitePatterns | Tub family signature 1. | 344 | 357 | IPR018066 | - | |
Mch10g0790 | 416 | ProSitePatterns | Tub family signature 2. | 401 | 416 | IPR018066 | - | |
Mch10g0790 | 416 | PANTHER | TUBBY-RELATED | 42 | 415 | - | - | |
Mch10g0790 | 416 | Gene3D | - | 52 | 106 | - | - | |
Mch10g0790 | 416 | FunFam | Tubby-like F-box protein | 115 | 416 | - | - | |
Mch10g0790 | 416 | CDD | F-box_AtTLP-like | 58 | 102 | - | - | |
Mch10g0790 | 416 | PRINTS | Tubby superfamily signature | 373 | 392 | IPR000007 | - | |
Mch10g0790 | 416 | PRINTS | Tubby superfamily signature | 189 | 213 | IPR000007 | - | |
Mch10g0790 | 416 | PRINTS | Tubby superfamily signature | 394 | 416 | IPR000007 | - | |
Mch10g0790 | 416 | PRINTS | Tubby superfamily signature | 173 | 189 | IPR000007 | - | |
Mch10g0790 | 416 | PRINTS | Tubby superfamily signature | 344 | 360 | IPR000007 | - | |
Mch10g0790 | 416 | PRINTS | Tubby superfamily signature | 326 | 343 | IPR000007 | - | |
Mch10g0790 | 416 | PRINTS | Tubby superfamily signature | 238 | 265 | IPR000007 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g0790 | Mch-Chr10:5496465 | Mch11g0176 | Mch-Chr11:1149384 | 3.14E-185 | dispersed | |
Mch10g0513 | Mch-Chr10:3356046 | Mch10g0790 | Mch-Chr10:5496465 | 2.30E-158 | transposed | |
Mch4g1886 | Mch-Chr4:21539841 | Mch10g0790 | Mch-Chr10:5496465 | 9.03E-154 | transposed | |
Mch1g1508 | Mch-Chr1:16517309 | Mch10g0790 | Mch-Chr10:5496465 | 1.90E-220 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42471 | PF01167 | Tub | 2.40E-106 | CL0395 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g0790 | K19600 | - | csv:101205595 | 774.237 |