Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0804 ATGAGAACACTTTGTGACGCTTGTGAAAGCGCTGCCGCTATCGTCTTTTGCGCTGCTGACGAGGCCGCCCTTTGCCGCGCCTGCGACGAGAAGGTTCATATGTGCAATAAACTTGCGAGTCGACATGTAAGAGTTGGCCTTGCAAATCCCAGTGACGCACCCCGTTGTGATATATGCGAGAATGCACCTGCTTTCTTTTACTGTGAGATCGATGGCAGTTCCCTTTGTTTACAATGTGATATGATCGTTCATGTTGGAGGGAAAAGGACACATAAAAGATACCTTTTGCTAAGGCAGAGGGTTGAGTTTCCAGGGGACAAACCTATAAATCTGGAGGATCCGTGTCCACATGCTAATGTTTCCAATGAGATAAGTAATAGACATAGTCAGCCACCAACGCATAAAGTGACAGTGGAAGACAATAAGCAAAATCATCACCGGCTATCACCTGTTCAAGAGGCTAACGATGATGGTCATGCCGAGACTGATACGAAAATGATTGATCTGAATATGAAGCCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGGATCTATGA 561 45.99 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLANPSDAPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGGKRTHKRYLLLRQRVEFPGDKPINLEDPCPHANVSNEISNRHSQPPTHKVTVEDNKQNHHRLSPVQEANDDGHAETDTKMIDLNMKPQRVHGQAANNQDL 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5576670 5580237 - MC10g0673 Mch10g0804 677897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0804 186 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Mch10g0804 186 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Mch10g0804 186 SMART bboxneu5 51 96 IPR000315 GO:0008270(InterPro)
Mch10g0804 186 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270(InterPro)
Mch10g0804 186 Pfam B-box zinc finger 3 41 IPR000315 GO:0008270(InterPro)
Mch10g0804 186 Gene3D Classic Zinc Finger 2 96 - -
Mch10g0804 186 FunFam B-box zinc finger protein 19 2 92 - -
Mch10g0804 186 MobiDBLite consensus disorder prediction 133 162 - -
Mch10g0804 186 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 172 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Mch10g0804 186 CDD Bbox1_BBX-like 56 96 IPR049808 -
Mch10g0804 186 CDD Bbox1_BBX-like 4 47 IPR049808 -
Mch10g0804 186 MobiDBLite consensus disorder prediction 112 162 - -
Mch10g0804 186 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0804 Mch-Chr10:5576670 Mch1g1566 Mch-Chr1:16894983 8.10E-67 dispersed
Mch10g0804 Mch-Chr10:5576670 Mch11g0147 Mch-Chr11:924436 2.32E-23 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42472 PF00643 zf-B_box 2.00E-06 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0804 - - - 0.0