Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0821 ATGAATCAGCAGCAGCAGCAGTACGGGCAGCCTGAGGAGGAGGAGATGGAAAAATCCTCCCCTGGAGATCATCATCATCATCAATACGGCTCTTCCCTTTTTATAGAGAAGGAGCACATGTTCGATAAAGTTGTTACCCCAAGCGATGTGGGAAAATTGAACCGCTTGGTCATCCCAAAACAGCACGCCGAGAAGTACTTCCCCTTGGATTCCTCCTCCAACGAGAAGGGCCTGCTCTTGAACTTCGAGGACCGTACCGGCAAATCGTGGCGGTTCCGTTACTCCTACTGGACCAGCAGCCAGAGCTACGTGATGACCAAAGGATGGAGCCGCTTCGTCAAGGAGAAAAGACTCGACGCTGGTGATATCGTGTCCTTCCAACGCGAGGTTGGTAAAGATCGCTTTTTTATTGATTGGCGCCGCCGCCCAATTGTTGCTCACACCGCCACGCCGGACTTCCACCACCACCACCACCACCTCCACGGCGGCCCAATTCCGCAGCACCATTTTCAGGTTCACCAGTGGAGGAGTAGTAGTAGTAATAATCCTTTAGCCACACCCTTATCTTCTATTCCCAGGGACCACGTTTTCCACTTGAGTAGTAGTAGTAATCATCATAATAATAATAATAATAATGTCAGCCTATTTCATAATTATTCCACCTATAACAATAATCCCATCATCTATGGCGCTGGTTTGGGGTCTCCGGTTGTTTACCACCTCAGATCCGCCGCGGCTGGCGGTGGGGCACCGCCGCAGGAGGCCGTGTTGGAGTCGGTGCCGGTGGCGGGTCATGGAAATGGGAGGGCTGCAGCCAAGACATTGAGGCTGTTTGGGGTGAACATGGAATGCGCCGTGTCGGAGGAACACTCGGATGAATGCGACGTAACAACGTCGTCGTCCGAATTCCGTCTTTACAATGGAATGCCAATGTCGATGTCATTGCCAATGCCGACGCCGAACAACAACGACATCATCCCGACTACTGACTTTTTCGGAAAAGGGAAGTCGTCGATGTCGTCGTCCTTTGATTTTGGTACC 1041 51.59 MNQQQQQYGQPEEEEMEKSSPGDHHHHQYGSSLFIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRTGKSWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQREVGKDRFFIDWRRRPIVAHTATPDFHHHHHHLHGGPIPQHHFQVHQWRSSSSNNPLATPLSSIPRDHVFHLSSSSNHHNNNNNNVSLFHNYSTYNNNPIIYGAGLGSPVVYHLRSAAAGGGAPPQEAVLESVPVAGHGNGRAAAKTLRLFGVNMECAVSEEHSDECDVTTSSSEFRLYNGMPMSMSLPMPTPNNNDIIPTTDFFGKGKSSMSSSFDFGT 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5729867 5730907 + MC10g0686 Mch10g0821 677914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0821 347 CDD B3_DNA 39 137 IPR003340 GO:0003677(InterPro)
Mch10g0821 347 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 4 282 IPR044800 GO:0003700(InterPro)
Mch10g0821 347 SUPERFAMILY DNA-binding pseudobarrel domain 38 141 IPR015300 -
Mch10g0821 347 SMART B3_2 41 143 IPR003340 GO:0003677(InterPro)
Mch10g0821 347 Gene3D - 34 159 IPR015300 -
Mch10g0821 347 Pfam B3 DNA binding domain 41 142 IPR003340 GO:0003677(InterPro)
Mch10g0821 347 ProSiteProfiles B3 DNA-binding domain profile. 41 143 IPR003340 GO:0003677(InterPro)
Mch10g0821 347 FunFam B3 domain-containing protein 34 152 - -
Mch10g0821 347 MobiDBLite consensus disorder prediction 1 28 - -
Mch10g0821 347 MobiDBLite consensus disorder prediction 11 28 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0821 Mch-Chr10:5729867 Mch6g2382 Mch-Chr6:25689779 8.63E-65 dispersed
Mch10g0821 Mch-Chr10:5729867 Mch2g0348 Mch-Chr2:2596558 1.74E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42474 PF02362 B3 2.70E-29 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0821 K09287 - csv:101220139 327.791