Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0840 ATGGTAATGGATGGTGACAATATTTCACAGCTGCTGAGTGCACCCACCAATGGTGATATTACACACACACAGCTTCTTCCTCTCAGCCAAAGCTGTGATGAAATTGACTGGGAAGGGCTGCTCTGTGGTTCGTCTTTGAGTTTGGAGATGGAGAAGGCAAGTGGAAGTGAGGGGATAAAAATGGGGGATTTTGATGGTGGAGCTGGAAGAAGAGATGAGGGTAATAATGGAGGGAAAAACAAAGGGAAAATGATGATGGGCAAAAGAAGTAGCAGTGCAGTAGTGCCTAGGATTGCTTTCCAGACAAGGAGTGCTGAGGATGTTCTTGATGATGGCTACAGATGGAGGAAATATGGTCAGAAGGCTGTCAAACATAGCACACATCCCAGGAGCTATTACCGGTGTACACATCATACATGCAACGTTAAGAAACAAATTCAAAGGCACTCAAAGGATCCAACCATAGTGGTGACAACATATGAAGGGATTCACAACCATCCATCTGAAAAATTAATGGAGACTCTAAGCCCTCTCCTCAAGCAATTGCAGTTCCTTTCTGGCATTTAG 567 44.44 MVMDGDNISQLLSAPTNGDITHTQLLPLSQSCDEIDWEGLLCGSSLSLEMEKASGSEGIKMGDFDGGAGRRDEGNNGGKNKGKMMMGKRSSSAVVPRIAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLSPLLKQLQFLSGI 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5868810 5869830 + MC10g_new0136 Mch10g0840 677933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0840 188 Gene3D WRKY domain 93 168 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0840 188 MobiDBLite consensus disorder prediction 57 89 - -
Mch10g0840 188 Pfam WRKY DNA -binding domain 110 167 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0840 188 SUPERFAMILY WRKY DNA-binding domain 102 168 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0840 188 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 73 167 IPR044810 GO:0003700(InterPro)
Mch10g0840 188 SMART WRKY_cls 109 168 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0840 188 ProSiteProfiles WRKY domain profile. 104 169 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g0840 188 FunFam WRKY transcription factor 57 95 169 - -
Mch10g0840 188 MobiDBLite consensus disorder prediction 64 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0840 Mch-Chr10:5868810 Mch8g1391 Mch-Chr8:10352924 5.32E-38 dispersed
Mch10g0839 Mch-Chr10:5863959 Mch10g0840 Mch-Chr10:5868810 7.36E-16 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42477 PF03106 WRKY 1.00E-24 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0840 - - - 0.0