Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0906 ATGGCTAATCGGGGAGGAGGGGGCTCATTTTCACCTTCAAATGTTTCCTCTCAAGGCTGGGGAGGAGATGAACTTTACACAGAGCTTTGGAAGGCCTCCGCTGGCCCTCTTGTGGAAGTCCCTCGCGTCCGCGAGAAGGTTTTCTACTTCCCTCAAGGCCATATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTGAATCAGAAACTTCCTTCGTTTAATCTCCCCTCCAAAATTCTTTGTCAAGTAGTTGATGTTCGGCTGCTGGCAGAGCACGAATCGGATGAGGTTTATGCACAAATAACTTTAATGCCAGAGCCAAATTTAGATGAACCTATAAGTCCTGATCCTTCCATCCCGGAATGTTCGAGACCGAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACCAGCACCCATGGCGGGTTCTCTGTGCTTCGTAAACATGCAACAGAATGCTTGCCTCCATTGGATATGACCCAACAGACCCCGACTCAGGAACTCGTCGCGAAAGATCTTCACGGTTACGAGTGGCGATTCAAGCATATTTTTAGGGGTCAGCCTCGAAGGCATTTGCTAACGACCGGATGGAGCACCTTTGTTACTTCTAAGAGATTAGTTGCTGGAGATTCTTTTGTATTCTTGAGGGGGGAAAACGGGGAGTTGCGAGTTGGAGTGAGACGTCTTGCTCGCCAACAAAGCAGCATGCCTTCGTCGGTGATCTCGAGTCACAGCATGCACCTAGGAGTGCTTGCTACTGCATCTCATGCCGTGTCAACTCAAACTCGCTTTGTTGTCTATTATAAGCCCAGGGCGAGCCAGTTTATCGTTAGCTTGAATAAGTACATAGAAGCGATGAACAATAAGTTCTTAGTCGGGATGAGGTTCAAGATGAAGTTCAAGGGAGAGGAGTCTCCAGAGAGAAGGTTTTCGGGCACCATAATTGGAGTTGATGATATGTCGCCTCACTGGCCCGAATCAAAATGGCGGTCATTGAAAGTTCAATGGGATGAACTTGCATCTATTCTGCGACCTGATAGGGTCTCACCTTGGGAGATAGAACCTTTCGTGGCTCCTACATCCCCGAACATGGTGCAATCGGTTCCAATCAAGAATAAAAGGCCCCGGCCCCCACTTGAAATTCCAGATTCTGATAACTCGACCGTAACGACTCTACGACATCCTGGATCAACTCAAGCACATGATGATAGAACACAGCTGACTGCTGCTGCTACTGACATTAAAAGATTTGAAAATCATGTGACATGGCATTACAAGCAAACGGATGTCAGCAGCAACGGTAATTCCATATCGAGGACTCCAAATGAAGGATCTTGGTTAACTTCCCCAAATGCAAGTGTTTCTCAGCATCGGTTACAGGATTTTACAGAGGACCGCAAAAGCAATTCTGTTTGGTCAGCTGTTTTCCCAGGAGCACCAACAGGACACTCAGGATGTGCAACTCCACGCTCGCCAAATCCTAAGAATGACCAAATACACGACCTCGGGGGAAAGGGGAGGAAAACTGAGGTGGCTTCGAGCTGTAGATTGTTCGGGATTGAGCTCATTAATCATTCTAAGAGCTCAGTTCCATCTGAAAGGGCAGCTGATCAACCGATTACCGCAGCGAACGAGATCACTGAAAGCCATGCCAATACAAGCCATGTCAATACCTTGCTATCATCTAATGCAGAGCAGAACTCAGACCTTCCAAAGGCTTCTAAAGAAAGAAAACTAGGACTTTTACAAGCACCTCCCAAAGAGATCCAGCACAAGCAGAACAGTTCGACCAACAGCCGAAGCCGAACCAAGGTTCAAATGCAGGGGATGGCTGTAGGACGTGCGGTGGACCTTACAACGTTGGAAGGGTATGGGCAACTCATCGATGAATTGGAGAAGATGTTCGATATCAAGGGAGAACTTCGCCCTCGTGATAAGTGGGAGATTGTCTTCACTGACGATGAAGGCGATACAATGCTCATGGGCGATTACCCGTGGCAGGAGTTCTGTAACATGGTGAGAAGAATATACATATGGTCAAGTCAGGATGTGAAGATGAGTTCAGGTAGCAAACTTACGATGTCGGCAATGGAAGGTGACGGGACGGTAATAACCTCGGAGTCGGCCGACAGTTGA 2142 47.62 MANRGGGGSFSPSNVSSQGWGGDELYTELWKASAGPLVEVPRVREKVFYFPQGHMEQLEASTNQELNQKLPSFNLPSKILCQVVDVRLLAEHESDEVYAQITLMPEPNLDEPISPDPSIPECSRPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIVSLNKYIEAMNNKFLVGMRFKMKFKGEESPERRFSGTIIGVDDMSPHWPESKWRSLKVQWDELASILRPDRVSPWEIEPFVAPTSPNMVQSVPIKNKRPRPPLEIPDSDNSTVTTLRHPGSTQAHDDRTQLTAAATDIKRFENHVTWHYKQTDVSSNGNSISRTPNEGSWLTSPNASVSQHRLQDFTEDRKSNSVWSAVFPGAPTGHSGCATPRSPNPKNDQIHDLGGKGRKTEVASSCRLFGIELINHSKSSVPSERAADQPITAANEITESHANTSHVNTLLSSNAEQNSDLPKASKERKLGLLQAPPKEIQHKQNSSTNSRSRTKVQMQGMAVGRAVDLTTLEGYGQLIDELEKMFDIKGELRPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMSSGSKLTMSAMEGDGTVITSESADS 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6405045 6409758 + MC10g0764 Mch10g0906 677999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0906 713 MobiDBLite consensus disorder prediction 433 454 - -
Mch10g0906 713 SUPERFAMILY CAD & PB1 domains 596 678 - -
Mch10g0906 713 MobiDBLite consensus disorder prediction 590 606 - -
Mch10g0906 713 Gene3D - 127 231 IPR015300 -
Mch10g0906 713 Pfam B3 DNA binding domain 130 230 IPR003340 GO:0003677(InterPro)
Mch10g0906 713 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 689 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch10g0906 713 Gene3D - 597 689 - -
Mch10g0906 713 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677(InterPro)
Mch10g0906 713 SMART B3_2 130 232 IPR003340 GO:0003677(InterPro)
Mch10g0906 713 MobiDBLite consensus disorder prediction 483 509 - -
Mch10g0906 713 MobiDBLite consensus disorder prediction 385 407 - -
Mch10g0906 713 FunFam Auxin response factor 291 362 - -
Mch10g0906 713 CDD B3_DNA 128 230 IPR003340 GO:0003677(InterPro)
Mch10g0906 713 Gene3D - 291 362 - -
Mch10g0906 713 Pfam Auxin response factor 256 335 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch10g0906 713 FunFam Auxin response factor 128 232 - -
Mch10g0906 713 MobiDBLite consensus disorder prediction 366 407 - -
Mch10g0906 713 ProSiteProfiles PB1 domain profile. 602 683 IPR053793 -
Mch10g0906 713 Pfam AUX/IAA family 649 685 IPR033389 -
Mch10g0906 713 Pfam AUX/IAA family 589 638 IPR033389 -
Mch10g0906 713 MobiDBLite consensus disorder prediction 585 606 - -
Mch10g0906 713 SUPERFAMILY DNA-binding pseudobarrel domain 119 259 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0906 Mch-Chr10:6405045 Mch6g2320 Mch-Chr6:25135217 5.32E-286 dispersed
Mch10g0906 Mch-Chr10:6405045 Mch1g2064 Mch-Chr1:20009579 1.33E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42483 PF02362 B3 7.20E-22 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0906 K14486 - csv:101213942 1173.69