Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0911 ATGACCGAGCCGGACGCCGATCACCCATCTGGATTTTGCCCCAAGTCCGGTAACCGGCCGCCCAGTGCCGACGACAGGACCCCACTTATGGATTTCGATCTGGACTTGGACATTTCTTGGCCCTTGGATCAAATCCATTCGTTTGCTTCCAACCCCATGTCCCCCTTTTTGATTTCCACCTCCGATCATCTTGGTTCCCCTCTTTGGGCCTTCTCCGAAGCTGATGATGACCATGATTCCAAGTTCGTTAACGACGCTTGCTCTGTTCTCGGTACTTCCAATTCGAATTCTGTAGCGCAAAAGCCAACTGAGAACCACAAGTTTAAGATTCTTCCAGTTCCATCTTCGTCGTGGGGACTAACGCCATCGGAGAATCCAGATGGTTATTGCCTAATTAAAGAGAAAATGGCACAAGCCCTTCGGTACATAAAAGAATCGTCTGACCAGCATGTTCTAGCTCAGGTTTGGGCACCCATTAAGAGAGATGGGAAGGTTGTCCTTTCTACTTACGGGCAACCGTTTGTCCTTGATACACAGAGCAATGGACTTCATCAGTATAGGATGGTCTCTTTGATGTTTATGTTTTCTCTGGACACCGACCCAGATGGATATCTCGGACTCCCTGGTCGTGTTTATCAACAAAAATTGCCTGAATGGACTCCAAATGTGCAGTATTACTCGAGCAAGGAGTATCCACGACTTAGTCATGCTCTTCACTACAATGTTCAGGGGACCTTGGCTTTGCCTGTTTTCGACCCTTCCGGGCAGTCTTGTCTTGGTGTTCTCGAGCTAATCATGACCTCACCGAAGATCAATTATGCACCGGAGGTGGACAAAATCTGCAAGGCTCTTGAGGCTGTCAATCTTAAAAGTTCTGAGATTTTGGATCGTGCGAATAACCAGATTTGCAACGAAGGTCGACAGAATGCGCTTGCTGAAATTTTGGAGGTACTCACAGTTGTATGCGAAACTCATAACTTACCATTGGCTCAAACCTGGGTTCCATGCAGGCATCGTAACGTACTCGCCTATGGTGGAGGTTTCAAGAAAAACTGTACTACCTTTGATGGTAGTTGCATGGGACGAATTTGTATGTCTGCAACTGAGGTAGCGTTCTATGTTGTCGATGCTCACATGTGGGGTTTTCGAGAGGCGTGTTTAGAACATCATTTGCAAAAAGGTCAAGGGGTTTCTGGGAGAGCGTTTTCATCCCACAGCTCATGTTTTTGTGGAGATATCACCCAATTCTGCAAGACTGAATACCCTTTGGTACACTATGCACTCATGTTCGGATTAAAGAGCTGTTTTTCGATCTGCTTACGGAGCACGTTTACTGGAGATGATGAGTACATTCTAGAGTTTTTTCTGCCGCCAAGCATTGTTGATTATCAGGAACAGAAGAATTTGTTGGGTGCACTAATGGCAACGATGAAGCAGCATTTCTACACTCTCAAAGTTGCTTCTGGAATCAACCTTGAGGAGGAGGAAGGACTTGTCGAGGTCATTCAAGCATCGGGAAATGAAGGGTTCGAGTCTAGACTCGAATACATTCAAATTCCCCAACCTATGGAGTTGCCACCCAAGACTGATGCCATGGCAAATGCAGGAGAGATAGCTGCATCAGAACCATTGAAACAGCAATCTTTTGTGGTTGGTGATGCCGCAAAGGACGAAAACAATTCCGCTCGGGAGGGGGAAAACCACAACCCTGTTCCTTGTCCACAGAATAAGGAAGTAAAAAAGCCATCTGAAAGGAAACGTGGCAAAGCGGAGAAATCAATCAGTCTGGAGGTTTTACAACAATATTTTGCTGGCAGTCTTAAGGATGCTGCTAAAAGCCTCGGCGTTTGTCCTACAACGATGAAGCGGATCTGTAGACAACACGGGATCTCACGGTGGCCATCTCGGAAGATCAACAAGGTCAATCGCTCTCTTTCAAAGCTAAAACGCGTGATTGAATCTGTGCAAGGGGCTGAAGGAGCATTTGGAATATCTTCTCTGGCTACAAGTCCAATTCCTGTTACTGTTAGTTCGAGTTCTCATCCTCTAACTCCGGATGGGTCTAATCAGCAGAACTTTGCTGCTTCTCAACCCTCTGATCCTCAACATAAAGAAACAAACACCTCAGAAACACAGACATATGACACACGAGCTAGATTGGATGATCAATTACACAGGGGGAGTGGATCACGGGAAGGGAGCATTGGGACGCCTACTTCTCACGGTTCGTGCCAAGGTAGTCCTGCAAACGACAGTGCAGCAGTAGCGAACAATCCGCTTTCTATTCCCCACCAAGAACAATGTGTAAGAAGAGAATCTCCTGAAGTAACGTTGCATCCAATGGATAGACTGAACATGTTGGCGCCCGCTTGTCCCATCCCGGATACACTCGCGATGGTTGAGGCCGAGGAACCATTTGGAGGAATGCTGATCGAGGATGCAGGAAGTTCCAAGGACCTAAAAAATCTTTGTGCTTCTGTCGGTGATGCTGTCCTCGACGAGCAAATACTCGAATTTTCTTGGCCCAACCCTCCTGATAATCAAGCTCTGAAACAACCCATGGACTCTACTATTTGTCACACAGTTCCTCATATATCAGTTAGGCAAGAGCCAAGGAGGATGACAATCAAGGCCACTTATAAGGAAGATATTATTCGGTTTCGGATTCCCTTGAGTTCCGGTATTGTCGAGTTAAGAGAAGAAGTGGCAAAGAGACTGAAGTTGGAGGTCGGTACGTTTGATATCAAATACATGGACGACGATCGAGAATGGGTTCTCATTGCTTGCGATGCAGACCTACAAGAGTGTGTAGATATCTCAAGATCATCAGGTAGCAATATAATAAGATTGTTGGTTCATGATTTAACTGTTAATCTTGGGAGTTCTTGTGAGAGTACCGGGGAG 2904 46.21 MTEPDADHPSGFCPKSGNRPPSADDRTPLMDFDLDLDISWPLDQIHSFASNPMSPFLISTSDHLGSPLWAFSEADDDHDSKFVNDACSVLGTSNSNSVAQKPTENHKFKILPVPSSSWGLTPSENPDGYCLIKEKMAQALRYIKESSDQHVLAQVWAPIKRDGKVVLSTYGQPFVLDTQSNGLHQYRMVSLMFMFSLDTDPDGYLGLPGRVYQQKLPEWTPNVQYYSSKEYPRLSHALHYNVQGTLALPVFDPSGQSCLGVLELIMTSPKINYAPEVDKICKALEAVNLKSSEILDRANNQICNEGRQNALAEILEVLTVVCETHNLPLAQTWVPCRHRNVLAYGGGFKKNCTTFDGSCMGRICMSATEVAFYVVDAHMWGFREACLEHHLQKGQGVSGRAFSSHSSCFCGDITQFCKTEYPLVHYALMFGLKSCFSICLRSTFTGDDEYILEFFLPPSIVDYQEQKNLLGALMATMKQHFYTLKVASGINLEEEEGLVEVIQASGNEGFESRLEYIQIPQPMELPPKTDAMANAGEIAASEPLKQQSFVVGDAAKDENNSAREGENHNPVPCPQNKEVKKPSERKRGKAEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGISSLATSPIPVTVSSSSHPLTPDGSNQQNFAASQPSDPQHKETNTSETQTYDTRARLDDQLHRGSGSREGSIGTPTSHGSCQGSPANDSAAVANNPLSIPHQEQCVRRESPEVTLHPMDRLNMLAPACPIPDTLAMVEAEEPFGGMLIEDAGSSKDLKNLCASVGDAVLDEQILEFSWPNPPDNQALKQPMDSTICHTVPHISVRQEPRRMTIKATYKEDIIRFRIPLSSGIVELREEVAKRLKLEVGTFDIKYMDDDREWVLIACDADLQECVDISRSSGSNIIRLLVHDLTVNLGSSCESTGE 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6449488 6453883 + MC10g0768 Mch10g0911 678004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0911 968 CDD PB1_NLP 874 954 IPR034891 -
Mch10g0911 968 ProSiteProfiles RWP-RK domain profile. 580 661 IPR003035 -
Mch10g0911 968 Pfam RWP-RK domain 593 640 IPR003035 -
Mch10g0911 968 ProSiteProfiles PB1 domain profile. 873 955 IPR053793 -
Mch10g0911 968 SUPERFAMILY CAD & PB1 domains 866 955 - -
Mch10g0911 968 SMART PB1_new 873 955 IPR000270 GO:0005515(InterPro)
Mch10g0911 968 MobiDBLite consensus disorder prediction 675 756 - -
Mch10g0911 968 Pfam NLP protein GAF domain 301 484 IPR055081 -
Mch10g0911 968 Pfam NLP protein GAF domain 150 285 IPR055081 -
Mch10g0911 968 MobiDBLite consensus disorder prediction 675 714 - -
Mch10g0911 968 MobiDBLite consensus disorder prediction 730 756 - -
Mch10g0911 968 Gene3D - 871 954 - -
Mch10g0911 968 MobiDBLite consensus disorder prediction 557 591 - -
Mch10g0911 968 PANTHER PROTEIN NLP8 66 967 IPR045012 GO:0003700(InterPro)
Mch10g0911 968 FunFam RWP-RK domain-containing protein 870 954 - -
Mch10g0911 968 MobiDBLite consensus disorder prediction 1 28 - -
Mch10g0911 968 Pfam PB1 domain 874 954 IPR000270 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0911 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0911 Mch-Chr10:6449488 Mch5g1024 Mch-Chr5:7971741 1.24E-130 dispersed
Mch10g0911 Mch-Chr10:6449488 Mch11g0056 Mch-Chr11:367262 3.09E-134 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch10g0911 . 187 968 NLP Transcription Factor Family AT1G64530 53.2 2.1e-217 752.3
Mch10g0911 . 266 968 NLP Transcription Factor Family AT4G24020 55.3 4.2e-202 701.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42484 PF00564 PB1 2.40E-19 CL0072 Mch TF