Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0920 TCTATAGGTGAGGCACTTCTAAGCTTTAAGATGGCAGTTGCCAGTTCTGATGGGGTCATCTTTCAGTGGAGACCAGAGGATCCAAACCCATGTAACTGGACGGGAGTGGTGTGCGATTCAAAAACAAAGAGAGTAATATCACTGAAACTTGCAAGTCACAAACTGAGTGGGTTCATTGCACCTGAACTTGGGAAGCTAGACCAATTGAAGACCCTAGCTCTTTCTGACAACAATTTATATGGAACAATACCATCAGAACTGGGAAATTGCTCACAGTTGCAGGGAATGTTCTTGCAAAGAAACTACCTAAGCGGAGTGATTCCCATTGAACTGGGAAACCTCTCTGAGTTGGAAATATTAGACGTTTCTAGCAACTCACTTAGTGGAAATATCCCAACGTCCCTTGGGAATTTGGATAAGCTCGCTATTCTCAATGTGTCATCAAATTTTTTAATTGGACCAGTACCTTCTGATGGTGTTCTTTCCAAGTTTTCAGAGACTTCCTTTGTTGGAAATCGGGGCTTGTGCGGGAAACAAGTCAGTGTCACTTGCAAAGAAAATAACACAGGATCTGGAACAAATTCCGAGTCCCCGAGCTCAGGCCAAAATCAAATAAGGAGGAAGTACTCTGGCCGGCTGCTCATCAGTGCATCAGCTACAGTGGGGGCACTACTACTTGTTGCTCTTATGTGTTTCTGGGGTTGCTTTCTTTATAAAAGATTTGGCAAAAATGACAAGAAAGGTCTTGCAAAGGATGTCGGTGGAGGTGCATCCATTGTGATGTTTCATGGAGACTTACCATACTCTTCAAAAGACATCATGAAGAAGTTGGAAACCTTGAATGAGGAACACATAATTGGTTCTGGGGGTTTTGGAACAGTTTACAGGCTTGCAATGGATGATGGCAATGTTTTTGCTTTGAAAAATATTGTAAAGATAAATGAGGGGTTTGATCATTGTTTTGAGAGGGAACTTGAAATTCTTGGAAGTTTAAAGCATCGGTACCTTGTTAATTTGCGAGGATATTGCAACTCTCCCACATCAAAACTGTTGATTTATGATTACCTATCTGGGGGTAGCCTTGATGAGGCCCTTCATGAAAGATCTGAGCAATTAGATTGGGATACACGCTTGAATATTATATTGGGAGCAGCAAAAGGGCTTGCCTATCTGCATCATGATTGTTCACCCAGAATCATACATCGAGATATAAAGTCAAGCAACATTTTACTTGATGGCAATCTGGATGCTCGAGTTTCTGACTTTGGACTTGCCAAGCTTCTGGATGATGATAAATCTCACATTACAACCATTGTTGCCGGAACATTTGGTTATTTGGCCCCCGAATATATGCAAAGTGGTAGAGCAACTGAAAAGACCGATGTATATAGTTTCGGAGTGCTGGTACTTGAAGTACTGAGCGGAAAAAGACCTACAGATGCATCATTTATTGAGAAAGGCCTGAACATTGTTGGCTGGCTAAATTTTCTCATCACAGAGAATAGGCAACGAGAAATAGTTGATTCACAATGTGAAGGAGTGCAGACAGAAACTCTTGACGCATTGCTCAGGCTTGCTATTCAGTGTGTTTCTTCTAGTCCAGATGACCGGCCAACCATGCATCGAGTAGTCCAGTTCTTTGAATCCGAGGTTATGACGCCATGCCCAAGTGACTTTGATGATTCCAATTCTGATTAA 1698 41.99 SIGEALLSFKMAVASSDGVIFQWRPEDPNPCNWTGVVCDSKTKRVISLKLASHKLSGFIAPELGKLDQLKTLALSDNNLYGTIPSELGNCSQLQGMFLQRNYLSGVIPIELGNLSELEILDVSSNSLSGNIPTSLGNLDKLAILNVSSNFLIGPVPSDGVLSKFSETSFVGNRGLCGKQVSVTCKENNTGSGTNSESPSSGQNQIRRKYSGRLLISASATVGALLLVALMCFWGCFLYKRFGKNDKKGLAKDVGGGASIVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYRLAMDDGNVFALKNIVKINEGFDHCFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEQLDWDTRLNIILGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLITENRQREIVDSQCEGVQTETLDALLRLAIQCVSSSPDDRPTMHRVVQFFESEVMTPCPSDFDDSNSD 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6509109 6516620 - MC10g0777 Mch10g0920 678013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0920 565 SUPERFAMILY L domain-like 4 163 - -
Mch10g0920 565 Pfam Leucine rich repeat N-terminal domain 3 39 IPR013210 -
Mch10g0920 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 399 411 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch10g0920 565 ProSitePatterns Protein kinases ATP-binding region signature. 286 308 IPR017441 GO:0005524(InterPro)
Mch10g0920 565 ProSiteProfiles Protein kinase domain profile. 280 552 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0920 565 Gene3D Transferase(Phosphotransferase) domain 1 356 554 - -
Mch10g0920 565 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 356 558 - -
Mch10g0920 565 Gene3D Phosphorylase Kinase; domain 1 256 355 - -
Mch10g0920 565 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 129 549 IPR050647 -
Mch10g0920 565 SUPERFAMILY Protein kinase-like (PK-like) 263 547 IPR011009 -
Mch10g0920 565 Pfam Leucine rich repeat 68 127 IPR001611 GO:0005515(InterPro)
Mch10g0920 565 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 254 355 - -
Mch10g0920 565 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 161 - -
Mch10g0920 565 Gene3D Ribonuclease Inhibitor 3 186 IPR032675 -
Mch10g0920 565 Pfam Protein kinase domain 282 545 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0920 565 SMART serkin_6 280 547 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0920 Mch-Chr10:6509109 Mch11g0882 Mch-Chr11:5992348 5.92E-274 dispersed
Mch10g0920 Mch-Chr10:6509109 Mch3g1516 Mch-Chr3:17303774 1.61E-154 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77013 PF00069 Pkinase 1.60E-47 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0920 - - - 0.0