Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch10g0943 | ATGAGATTCCGTGTGTGCGCCTTGAGCTGTACTGAAAGCCCCTCTTTCTCTCTTGTTTCTCCCTTCGCCATTAATTCACCATCAAAACACTATATATACCCCTTTCTCAATCCCATCTTTCTTCACCCTCCTCTGCAACTTCAAACTTCAAACTTCAACTTCATCACCATGCTCTGTTTTCTCTGTTTCTCTCTCTTCTTCTTCTTCTTCCTCCTTCGTTCTCTCTCCAAATCCTCCGCTGCCCCTCGCCGGAAACTCCCCCTGCCCCCCGGCTCAATGGGCTGGCCCTACATGGGAGAAACCTTCCAGCTCTACTCTCAAGACCCCAATGTCTTCTTTGCCTCTAAAAAGAAGAGATATGGGCCAATTTTCAAGTCCCACATATTGGGGTATCCTTGTGTGATGGTTTCGAGCCCTGAGGCTGCCAAGTTTGTGCTTGTCACTAAAGCTCATCTCTTTAAGCCTACATTCCCGGCCAGTAAAGAGAGGATGCTCGGCAAAAATGCCATCTTTTTTCATCAAGGAGATTACCATGCCAAATTGAGGCGGCTCGTGCTTCGAACTTTCATGCCTGAGAAGATCCGAAACATCGTCCCGTCGATCGAATCCATTGCCAAGAACACCGTTCAATCTTGGGAAGGCCAATCCATCAACACCTTCCAAGAAATGAAGATGTTCGCATTCGAGGTTTCGTTGCTTTCGATATTCGGAAAAGACGAAGCTCTCTACTTTGAGGACCTGAAGCGATGCTACTACATTCTCGAGAAAGGCTACAATTCGATGCCGATAAACCTGCCCGGAACACTCTTCCACAAGGCCATGAAAGCCAGGAAAGAGCTAGCAAATATCCTCACCAAGATCCTCTCAACCAGGAGAGAAATGAAGCGCGACCACAACGACCTCCTCGGATCGTTCATGGGCGAAAAGGAAGGCCTCACCGACGAGCAGATCGCCGATAACGTCATCGGTCTCATCTTCGCCGCCCGGGACACGACCGCGAGTGTTCTAACATGGATCTTGAAGTATCTAGGAGAAAACCCAAGTGTTCTTCAAGCTGTCACTGCTGAACAAGAAGCAATAATGAAAGCAAAACAGAGTGGAGATGATAATCTCACCTGGGGTGACACCAAAAACATGCCAGTCACTTCAAGGGTCATTCAAGAAACTCTAAGAGTGGCCTCTGTTCTATCATTTACCTTCAGAGAAGCAGTGGAAGATGTTGAATTTGATGGATATTTGATTCCAAAAGGATGGAAAGTTTTGCCTCTCTTCAGAAACATTCATCACAGCCCAGAAATTTTCCCCCACCCTGAAAAGTTTGACCCTTCAAGATTTGAGGTTGCTCAAAAGCCCAATACCTACATGCCATTTGGCAATGGGACCCACTCCTGCCCAGGAAATGAATTGGCCAAGCTGGAGATGCTGGTTCTACTCCATCATTTAACCACAAAGTACAGGTGGAGTGTAGTGGGAGCACAAGAAGGGATTCAATACGGCCCTTTTGCCCTTCCCCACAATGGACTGCCCATTAGAATCTCTCTAAAGAAGTAG | 1551 | 47.2 | MRFRVCALSCTESPSFSLVSPFAINSPSKHYIYPFLNPIFLHPPLQLQTSNFNFITMLCFLCFSLFFFFFLLRSLSKSSAAPRRKLPLPPGSMGWPYMGETFQLYSQDPNVFFASKKKRYGPIFKSHILGYPCVMVSSPEAAKFVLVTKAHLFKPTFPASKERMLGKNAIFFHQGDYHAKLRRLVLRTFMPEKIRNIVPSIESIAKNTVQSWEGQSINTFQEMKMFAFEVSLLSIFGKDEALYFEDLKRCYYILEKGYNSMPINLPGTLFHKAMKARKELANILTKILSTRREMKRDHNDLLGSFMGEKEGLTDEQIADNVIGLIFAARDTTASVLTWILKYLGENPSVLQAVTAEQEAIMKAKQSGDDNLTWGDTKNMPVTSRVIQETLRVASVLSFTFREAVEDVEFDGYLIPKGWKVLPLFRNIHHSPEIFPHPEKFDPSRFEVAQKPNTYMPFGNGTHSCPGNELAKLEMLVLLHHLTTKYRWSVVGAQEGIQYGPFALPHNGLPIRISLKK | 516 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 6658693 | 6662064 | - | MC10g0796 | Mch10g0943 | 678036 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch10g0943 | 516 | CDD | CYP90-like | 118 | 513 | - | - | |
| Mch10g0943 | 516 | PANTHER | CYTOCHROME P450 26 | 87 | 485 | - | GO:0004497(PANTHER)|GO:0009687(PANTHER)|GO:0010295(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0016709(PANTHER) | |
| Mch10g0943 | 516 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 457 | 466 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Mch10g0943 | 516 | SUPERFAMILY | Cytochrome P450 | 83 | 512 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch10g0943 | 516 | Gene3D | Cytochrome P450 | 77 | 514 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch10g0943 | 516 | PRINTS | P450 superfamily signature | 327 | 344 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch10g0943 | 516 | PRINTS | P450 superfamily signature | 384 | 395 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch10g0943 | 516 | PRINTS | P450 superfamily signature | 464 | 475 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch10g0943 | 516 | PRINTS | P450 superfamily signature | 455 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch10g0943 | 516 | Pfam | Cytochrome P450 | 89 | 490 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch10g0943 | 516 | PRINTS | E-class P450 group I signature | 117 | 136 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch10g0943 | 516 | PRINTS | E-class P450 group I signature | 316 | 333 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch10g0943 | 516 | PRINTS | E-class P450 group I signature | 423 | 447 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch10g0943 | 516 | PRINTS | E-class P450 group I signature | 454 | 464 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch10g0943 | 516 | PRINTS | E-class P450 group I signature | 383 | 401 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch10g0943 | 516 | PRINTS | E-class P450 group I signature | 336 | 362 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch10g0943 | 516 | PRINTS | E-class P450 group I signature | 464 | 487 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Mch10g0943 | 516 | FunFam | Abscisic acid 8 | 78 | 514 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch10g0943 | Mch-Chr10:6658693 | Mch3g0200 | Mch-Chr3:2628131 | 7.46E-198 | dispersed | |
| Mch10g0943 | Mch-Chr10:6658693 | Mch4g0691 | Mch-Chr4:4614509 | 3.80E-187 | transposed | |
| Mch10g0943 | Mch-Chr10:6658693 | Mch11g0286 | Mch-Chr11:1784827 | 7.38E-187 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch10g0943 | K09843 | - | csv:101212508 | 836.639 |