Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0956 ATGAATAATCTCAACAATCTCATCACCATTGCTCTCTCTTCTCTCATCCCTCTCCTTGCTTTCCTCCTCATCAATCATCCCGCTCCTCGCTTCCTCTCCGACCTTGACTTCGCCTTCCTCCGCGATCACGTCACGTGTCGTCGTCACCACCACCACCACCATCATCACCGTCGTCATGAAAGCCCGGCCGATGAAGAAGACCAGGCGGCTTCTAGTTCCATATGTGACATGTTCCCGGCTAGCCTTCTCCCGACAGAAACCAACACCACCTCCGTCTTTTGCGTCGACCGCAACGGGTGCTGCAACTTCACGACCGTTCAGGCGGCGGTCGACGCGGTGCCGAACCTGAGCCTGAAACGAAACTTGATTTGGATCAACAGCGGAATCTACTATGAGAAAGTGATGGTTCCCAGATCAAAACAAAACGTGACGTTTGAAGGACAGGGCTATACGACGACGGCCATTGTTTGGAACGACACGGCCAACTCTTCTCATGGCACCTTTTACAGTGCCTCTGTCCAAGTCTTCTCTTCCAATTTTATTGCCAAGAATATAAGCTTCGTGAACGTGGCGCCAATTCCGGGGCCGGGCGATGTGGGAGCGCAGGCGGTGGCGATGAGAATCGGCGGAGACGCGGCGGCGTTTTGGAGCTGCGGATTCTTCGGAGCCCAAGACACGCTCCACGACGACCGCGGCCGCCATTACTTCAAGGATTGCTACATCCAAGGCTCCATCGATTTCATCTTCGGCAACGGAAGATCCTTCTACGAGAGTTGCCAGTTGATTTCGATGGCGAATCCGGTGCCGCAAGGGTCGAAGTTTGTGAACGGAGCGGTGACGGCGCACGGCAGAGCCTCCGCCGACGAGAACTCTGGTTTTGCTTTCGTTAACTGCTCCGTCGCCGGGACCGGCAGGGTGTGGCTCGGCCGCGCGTGGCGTCCCTTCTCTCGCGTCGTCTTCGTGAATACTGTCATGACCGATATTATTGCACCCGAGGGGTGGAATGACTTTAATGACCCTGCCAGAGACCAGACGATCTTCTATGGAGAGTACAACTGCAGTGGCGCAGGCGCCAATACCGGCGCCAGGGCGCCGTTCGTTCAGAGGCTCAACGACACACAAGTTTCTCCTTTTCTCAACTTGTCTTTTATTGATGCAGACCAATGGCTACATCCCTATTGA 1182 54.99 MNNLNNLITIALSSLIPLLAFLLINHPAPRFLSDLDFAFLRDHVTCRRHHHHHHHHRRHESPADEEDQAASSSICDMFPASLLPTETNTTSVFCVDRNGCCNFTTVQAAVDAVPNLSLKRNLIWINSGIYYEKVMVPRSKQNVTFEGQGYTTTAIVWNDTANSSHGTFYSASVQVFSSNFIAKNISFVNVAPIPGPGDVGAQAVAMRIGGDAAAFWSCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNGRSFYESCQLISMANPVPQGSKFVNGAVTAHGRASADENSGFAFVNCSVAGTGRVWLGRAWRPFSRVVFVNTVMTDIIAPEGWNDFNDPARDQTIFYGEYNCSGAGANTGARAPFVQRLNDTQVSPFLNLSFIDADQWLHPY 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6796172 6799862 - MC10g0806 Mch10g0956 678049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0956 393 ProSitePatterns Pectinesterase signature 2. 241 250 IPR033131 -
Mch10g0956 393 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 80 391 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Mch10g0956 393 Pfam Pectinesterase 95 386 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch10g0956 393 Gene3D - 86 393 IPR012334 -
Mch10g0956 393 FunFam Pectinesterase 87 393 - -
Mch10g0956 393 SUPERFAMILY Pectin lyase-like 91 392 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0956 Mch-Chr10:6796172 Mch5g1693 Mch-Chr5:17694382 3.80E-105 dispersed
Mch10g0956 Mch-Chr10:6796172 Mch8g0781 Mch-Chr8:5514635 2.76E-78 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0956 - - - 0.0