Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g0989 ATGACTTGCTTCCCTTTTTTGTTCAGTAGGACTAAGAGGGTAAAACCCCCAACAGGAAGTATTGACGAGGATGAAGAACTTTCAGGCATTCACAATGTTAAATTTTACACATACAAAGAGCTGAAAGTTGCGACTGAAGATTTCAGCTTGGCAAATAAAATAGGGGAGGGCGGTTTTGGTTCTGTCTTCAAGGGAAAGCTAAAAGATGGAAAGATTGCTGCGATAAAAGTTCTTTCGGCTGAATCAAGACAAGGATTGAAAGAATTCTTGACAGAAATCAATGTCATCTCAGTGATTGAACACGAAAATCTGGTGCAGCTTTATGGATGCTGTGTGGATGATAATCATAGAATTCTTGTCTACAACTACCTCGAGAATAATAGCCTCCAACAAACTCTTCTCGGGCGAGGTTACAGTAACATCCAGTTTGGCTGGCAAACTAGGTCTATGATTTGCGTCGGAATTGCACGTGGGCTCGCATTTCTTCACGAGGATGTACAACCCCATATCATTCATAGAGATATCAAAGCGAGCAACATTCTCCTTGACCATGATCTCACTCCTAAAATTTCGGACTTTGGTCTTGCAAAGCTCATTCCAGCCAGCATGACTCACGTCAGTACACGAGTGGCAGGAACAATTGGTTACCTGGCACCAGAATATGCGATAAGAGGGCAAGTGACGAGAAAATCAGATATTTACAGTTTCGGTGTCCTCCTTGTGGAAATAGTCAGCGGGAGATGCAACACGAATTCACAGTTACCAATTGGAGAACAGTATATTCTCGAAAGGACATGGAGTCTTTACGAGCGGGGCGAGCTCGTTCTGCTGGTAGATATGTCGTTAAACGGCGACTTCGACGCCGAGGAGGCTTGTAAATATCTAAAGATTGGTCTACTCTGCACGCAAGACAGTCCGAAGCTGCGTCCATCCATGTCAACGGTGGTGAAGATGCTAACGGGCGAAATCAGCATCGAAGACAGAAAGATAACGAAACCGGGGCTGATTTCAGACTTCATGGATCTTAAGGTAAATAATCCAGCGAAAAACAAACAGAACAGAGGGGGAATGACTTCTGACAGTCTGTCCTCTGGATCACACAACCTTGGAAACTCAACAGTGTCATCTGGAACCTCAACTGTTACAACTGCAACCTTCACTGGACAATATGACAGGAACACTTTCTCATCAGTACTATGA 1200 43.92 MTCFPFLFSRTKRVKPPTGSIDEDEELSGIHNVKFYTYKELKVATEDFSLANKIGEGGFGSVFKGKLKDGKIAAIKVLSAESRQGLKEFLTEINVISVIEHENLVQLYGCCVDDNHRILVYNYLENNSLQQTLLGRGYSNIQFGWQTRSMICVGIARGLAFLHEDVQPHIIHRDIKASNILLDHDLTPKISDFGLAKLIPASMTHVSTRVAGTIGYLAPEYAIRGQVTRKSDIYSFGVLLVEIVSGRCNTNSQLPIGEQYILERTWSLYERGELVLLVDMSLNGDFDAEEACKYLKIGLLCTQDSPKLRPSMSTVVKMLTGEISIEDRKITKPGLISDFMDLKVNNPAKNKQNRGGMTSDSLSSGSHNLGNSTVSSGTSTVTTATFTGQYDRNTFSSVL 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7067822 7072355 + MC10g0836 Mch10g0989 678082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g0989 399 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524(InterPro)
Mch10g0989 399 MobiDBLite consensus disorder prediction 346 378 - -
Mch10g0989 399 ProSiteProfiles Protein kinase domain profile. 48 325 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0989 399 SMART serkin_6 48 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0989 399 CDD STKc_IRAK 54 321 - -
Mch10g0989 399 FunFam cold-responsive protein kinase 1 19 123 - -
Mch10g0989 399 FunFam cold-responsive protein kinase 1 124 335 - -
Mch10g0989 399 SUPERFAMILY Protein kinase-like (PK-like) 26 319 IPR011009 -
Mch10g0989 399 Pfam Protein kinase domain 50 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g0989 399 Gene3D Phosphorylase Kinase; domain 1 20 123 - -
Mch10g0989 399 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 32 358 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Mch10g0989 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch10g0989 399 Gene3D Transferase(Phosphotransferase) domain 1 124 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0989 Mch-Chr10:7067822 Mch10g1037 Mch-Chr10:7533418 5.67E-107 dispersed
Mch10g1058 Mch-Chr10:7720831 Mch10g0989 Mch-Chr10:7067822 1.04E-95 transposed
Mch1g0796 Mch-Chr1:11590267 Mch10g0989 Mch-Chr10:7067822 6.59E-123 transposed
Mch3g1143 Mch-Chr3:14723519 Mch10g0989 Mch-Chr10:7067822 3.87E-120 transposed
Mch5g1926 Mch-Chr5:19192939 Mch10g0989 Mch-Chr10:7067822 4.48E-110 transposed
Mch1g2003 Mch-Chr1:19604012 Mch10g0989 Mch-Chr10:7067822 1.36E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77015 PF00069 Pkinase 6.80E-47 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g0989 - - - 0.0