Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1003 ATGGAGGAGGATTATTCAGATCTCGATTTCAGCTTCACCAGCGACCGCACTCTCACCTCCTCCAGCGCCCGCACCTCCCTCGCCCGCTCCAGCCTCACCCTCAGCTTCAACGAGTCCCGTCTTTCCTCCGCCTCCGCCTCCGCCGCCGCCTCCCTCAACCTGCGCCCCCACCGCCACTCCCACCCCCACTGGTCCGCCATCAAAGCCGCCACCACCCTCTCCTCCGACGGCCACCTCCACCTCCGCCACCTCAAGCTCATCCGCCACCTCGGCACCGGCAACCTCGGCCGCGTTTTCCTCTGCCATCTCCGCGACAACGACCACGCCACCTTCGCCCTCAAGGTCGTCGATAAAGATTCCCTCTCCACCAAAAAGCTCTCTCAGGTCCAGATGGAGGCAGAGATTCTCGCTTCTCTGGACCACCCTTTTCTCCCAACTCTCTACGCGCGCCTCGACGTCTCCCACTACACGTGCCTCCTCATCGACTACTGCCCCGCCGGCGACCTCCACTCCCTCCTCCGCAACCAGCCCGCCAGCCGCCTCTCCGTCCCGGCGGTCAGATTCTTCGCCGCCGAGGTCCTCGTGGCGCTCGAGTACCTCCACGCGCTCGGCGTCGTCTACCGCGATCTCAAGCCCGAGAACGTTCTTCTGCGTGAGGACGGCCACGTCATGCTCTCTGACTTCGACCTCTGTTTTAAGGCTGAGGTGGTCCCCACTTTTCGTACGTGGAAGCGCCGGGGACCACACCGGGGGAGGGGGACCACTTCTGGCTGTTTTCGGTTTGGAAGAGGGGGTGACGTGGAGGACGAGATGGTCGCGGAGTTTGTGGCGGAGCCGACGGCGGCGTTTTCGAGGTCGTGCGTTGGGACCCACGAGTATCTGGCGCCGGAGTTGGTGTCCGGCCTCGGCCACGGCAGCGGCGTCGACTGGTGGGCGTTTGGGGTGTTCGTTTACGAGCTGCTCCACGGCACGACGCCGTTTAAGGGAGTGAACAAGGAGAGGACGCTTCGGAACATTGCGTCGTCGGAGGGGGTGAAGTTCCGGGCGGCGGCGGCGGTGGGGGAGGAAGAGGAGGGGATGGCGGAGGCGAGGGATCTGATTCGGCGGCTGCTGGTGAAGGATCCGGTGAGGCGGCTGGGGTCCGGCAAGGGGGCGACGGAGATCAAACGGCATCCGTTCTTCGACGGGATAAAGTGGCCGTTGATCCGGATGTACCGGCCGCCGGAGGTGTATGGGCTGATGAGAAAAGTGAGATCACACGTTGGCCACGTGACTGGCGTCCCCCACCGAGTGCGGCGGCGGGGCTGGTGGAACTGGAGGAGGCTCAGTCACCTTTTAATGAAAAATGGAAATTCCAGTAAATCTCATACCAATAGTAATTATTATAGTTATAGCTATAAAAATAAGATGGGT 1413 62.35 MEEDYSDLDFSFTSDRTLTSSSARTSLARSSLTLSFNESRLSSASASAAASLNLRPHRHSHPHWSAIKAATTLSSDGHLHLRHLKLIRHLGTGNLGRVFLCHLRDNDHATFALKVVDKDSLSTKKLSQVQMEAEILASLDHPFLPTLYARLDVSHYTCLLIDYCPAGDLHSLLRNQPASRLSVPAVRFFAAEVLVALEYLHALGVVYRDLKPENVLLREDGHVMLSDFDLCFKAEVVPTFRTWKRRGPHRGRGTTSGCFRFGRGGDVEDEMVAEFVAEPTAAFSRSCVGTHEYLAPELVSGLGHGSGVDWWAFGVFVYELLHGTTPFKGVNKERTLRNIASSEGVKFRAAAAVGEEEEGMAEARDLIRRLLVKDPVRRLGSGKGATEIKRHPFFDGIKWPLIRMYRPPEVYGLMRKVRSHVGHVTGVPHRVRRRGWWNWRRLSHLLMKNGNSSKSHTNSNYYSYSYKNKMG 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7175560 7176972 + MC10g0850 Mch10g1003 678096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1003 471 FunFam Serine/threonine-protein kinase OXI1 282 412 - -
Mch10g1003 471 FunFam Serine/threonine-protein kinase OXI1 168 236 - -
Mch10g1003 471 SUPERFAMILY Protein kinase-like (PK-like) 82 460 IPR011009 -
Mch10g1003 471 Gene3D Transferase(Phosphotransferase) domain 1 168 403 - -
Mch10g1003 471 Gene3D Phosphorylase Kinase; domain 1 85 167 - -
Mch10g1003 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch10g1003 471 ProSiteProfiles Protein kinase domain profile. 84 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1003 471 SMART serkin_6 84 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1003 471 PANTHER FLIPPASE KINASE 1-RELATED 36 413 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Mch10g1003 471 Pfam Protein kinase domain 86 234 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1003 471 Pfam Protein kinase domain 284 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1003 Mch-Chr10:7175560 Mch8g3098 Mch-Chr8:33399904 1.41E-110 dispersed
Mch10g1003 Mch-Chr10:7175560 Mch1g0907 Mch-Chr1:12399390 1.22E-98 transposed
Mch10g1003 Mch-Chr10:7175560 Mch3g0725 Mch-Chr3:11538666 3.22E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77016 PF00069 Pkinase 1.80E-33 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1003 - - - 0.0