Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1005 ATTTCCATTCCCATTTTCCAGTTTTCTTTCGAGTTCTCAGCAATGGCGGACGGGGAAGTGAAGCTTTTGGATTTCTGGCCCAGCATGTTCGGGATGCGGGTTAGAATAGCGCTGGCCGAGAAGGGCGTCGCCTACGAGTACGTGGACGAAGATTTGGCCAATAAGAGCCCTCTGCTTCTGCAGATGAACCCCATTCACAAGAAGATCCCTGTTCTCGTCCATAATGGAAAACCCATCTGCGAATCCTCTATTATTGTCGAGTATATTGATGAAGTGTGGAACCATAAGGCGCCTATTTTGCCCTCCGATCCTTACGAGAGGGCTCAGGCCAGATTCTGGGTGGATTACATCGACAAGAAGCTCTATGAGCCTACGAGGAAGATATGGGGCTCCAAGGGAGAGGAGCAAGAAGCAGGGAAGAAGGAGTTCATAGGAATTTTGAAGCAAATGGAGGAAGTTCTCGGGGAGAAAGCCTACTTTGGAGGTGAGCGTTTGGGATTTGTGGACATTTCTCTGATTGGATTCTGCACATGGTTTGATGTCTATGAATCCTTTGGGAACTTCAGCATTGAGGCTGAGTGTCCCAAGCTAATGGGTTGGGTTAAGAGATGCCTGCAAAATGAGAGTGTTTCAAAGACCCTGCCTGATCCCAAGAAGGTCCATGACTTTGTGCTTCAATGGAAGAAAAAATTAGGCCTC 699 47.93 ISIPIFQFSFEFSAMADGEVKLLDFWPSMFGMRVRIALAEKGVAYEYVDEDLANKSPLLLQMNPIHKKIPVLVHNGKPICESSIIVEYIDEVWNHKAPILPSDPYERAQARFWVDYIDKKLYEPTRKIWGSKGEEQEAGKKEFIGILKQMEEVLGEKAYFGGERLGFVDISLIGFCTWFDVYESFGNFSIEAECPKLMGWVKRCLQNESVSKTLPDPKKVHDFVLQWKKKLGL 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7210860 7212336 - MC10g0852 Mch10g1005 678098

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1005 233 CDD GST_C_Tau 104 226 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Mch10g1005 233 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 103 231 IPR010987 -
Mch10g1005 233 SUPERFAMILY GST C-terminal domain-like 91 230 IPR036282 -
Mch10g1005 233 CDD GST_N_Tau 20 93 - -
Mch10g1005 233 SFLD Main.3: Omega- and Tau-like 16 231 IPR045073 -
Mch10g1005 233 Gene3D - 103 233 - -
Mch10g1005 233 SFLD Main (cytGST) 16 231 - -
Mch10g1005 233 Pfam Glutathione S-transferase, C-terminal domain 136 203 - -
Mch10g1005 233 FunFam Tau class glutathione S-transferase 15 102 - -
Mch10g1005 233 Gene3D Glutaredoxin 15 102 - -
Mch10g1005 233 FunFam Glutathione S-transferase U20 103 233 - -
Mch10g1005 233 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 18 97 IPR004045 -
Mch10g1005 233 SUPERFAMILY Thioredoxin-like 20 122 IPR036249 -
Mch10g1005 233 Pfam Glutathione S-transferase, N-terminal domain 19 91 IPR004045 -
Mch10g1005 233 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 19 224 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1005 K00799 - - csv:101218562 374.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1005 Mch-Chr10:7210860 Mch4g1663 Mch-Chr4:19818072 6.32E-86 dispersed
Mch10g1004 Mch-Chr10:7190097 Mch10g1005 Mch-Chr10:7210860 1.52E-136 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g0763 . 1 209 Glutathione S-transferase Gene Family AT4G02520 54.2 3.3e-60 228.4
Mch9g0762 . 6 213 Glutathione S-transferase Gene Family AT4G02520 55.5 6.2e-59 224.2
Mch9g0763 . 1 210 Glutathione S-transferase Gene Family AT2G02930 55.1 1.3e-61 233.0
Mch9g0762 . 6 214 Glutathione S-transferase Gene Family AT2G02930 56.1 8.7e-61 230.3
Mch9g0762 . 9 210 Glutathione S-transferase Gene Family AT1G02950 53.7 1.1e-57 220.3
Mch9g0763 . 5 206 Glutathione S-transferase Gene Family AT1G02950 52.2 1.3e-55 213.4
Mch9g0762 . 6 214 Glutathione S-transferase Gene Family AT1G02930 53.6 1.9e-60 229.2
Mch9g0763 . 1 210 Glutathione S-transferase Gene Family AT1G02930 52.9 1.0e-58 223.4
Mch9g0762 . 6 214 Glutathione S-transferase Gene Family AT1G02920 54.5 2.7e-62 235.3
Mch9g0763 . 1 210 Glutathione S-transferase Gene Family AT1G02920 52.4 1.8e-58 222.6
Mch9g0763 . 1 215 Glutathione S-transferase Gene Family AT2G47730 56.5 1.2e-64 243.4
Mch9g0762 . 6 220 Glutathione S-transferase Gene Family AT2G47730 57.9 3.0e-63 238.8
Mch1g0661 . 174 314 Glutathione S-transferase Gene Family AT2G29490 53.2 1.4e-37 153.3
Mch1g0661 . 174 314 Glutathione S-transferase Gene Family AT2G29480 51.8 1.1e-37 153.7
Mch1g0661 . 174 314 Glutathione S-transferase Gene Family AT2G29460 52.1 5.4e-37 151.4
Mch1g0661 . 174 313 Glutathione S-transferase Gene Family AT2G29450 55.3 5.4e-37 151.4
Mch10g1004 . 108 265 Glutathione S-transferase Gene Family AT2G29420 52.5 1.5e-42 169.9
Mch1g0660 . 3 199 Glutathione S-transferase Gene Family AT3G09270 52.3 3.9e-59 224.9
Mch1g0661 . 174 314 Glutathione S-transferase Gene Family AT3G09270 58.0 1.5e-42 169.9
Mch10g1005 . 18 231 Glutathione S-transferase Gene Family AT1G78380 71.5 4.1e-90 327.8
Mch10g1004 . 107 287 Glutathione S-transferase Gene Family AT1G78380 74.6 2.1e-78 288.9
Mch4g1663 . 4 221 Glutathione S-transferase Gene Family AT1G78380 53.2 5.1e-64 241.1
Mch10g1005 . 22 229 Glutathione S-transferase Gene Family AT1G78370 64.4 7.7e-81 297.0
Mch10g1004 . 111 287 Glutathione S-transferase Gene Family AT1G78370 67.2 8.0e-70 260.4
Mch4g1663 . 7 220 Glutathione S-transferase Gene Family AT1G78370 52.3 2.3e-61 232.3
Mch10g1005 . 15 229 Glutathione S-transferase Gene Family AT1G78340 63.7 5.6e-79 290.8
Mch10g1004 . 104 287 Glutathione S-transferase Gene Family AT1G78340 67.9 4.6e-73 271.2
Mch4g1663 . 4 219 Glutathione S-transferase Gene Family AT1G78340 51.4 5.8e-60 227.6
Mch5g0151 . 1 171 Glutathione S-transferase Gene Family AT1G78340 50.6 2.0e-44 176.0
Mch10g1005 . 19 229 Glutathione S-transferase Gene Family AT1G78320 54.0 6.7e-60 227.3
Mch10g1004 . 108 287 Glutathione S-transferase Gene Family AT1G78320 55.0 1.1e-51 199.9
Mch10g1005 . 15 233 Glutathione S-transferase Gene Family AT1G17180 67.6 3.9e-88 321.2
Mch10g1004 . 104 287 Glutathione S-transferase Gene Family AT1G17180 71.2 3.1e-77 285.0
Mch4g1663 . 4 224 Glutathione S-transferase Gene Family AT1G17180 52.5 2.3e-64 242.3
Mch10g1005 . 15 232 Glutathione S-transferase Gene Family AT1G17190 57.3 2.4e-74 275.4
Mch10g1004 . 104 286 Glutathione S-transferase Gene Family AT1G17190 61.7 2.4e-66 248.8
Mch10g1005 . 15 226 Glutathione S-transferase Gene Family AT3G43800 53.7 2.3e-67 252.3
Mch10g1004 . 104 288 Glutathione S-transferase Gene Family AT3G43800 54.5 1.9e-58 222.6
Mch10g1005 . 17 233 Glutathione S-transferase Gene Family AT1G53680 55.3 1.5e-66 249.6
Mch4g1663 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.1 7.0e-61 230.7
Mch10g1004 . 106 287 Glutathione S-transferase Gene Family AT1G53680 58.2 1.6e-57 219.5
Mch2g1538 . 63 233 Glutathione S-transferase Gene Family AT2G02390 66.1 1.9e-62 235.7
Mch2g1536 . 46 216 Glutathione S-transferase Gene Family AT2G02390 63.7 2.5e-59 225.3
Mch5g0313 . 62 228 Glutathione S-transferase Gene Family AT2G02390 52.7 9.0e-49 190.3
Mch2g1538 . 22 232 Glutathione S-transferase Gene Family AT2G02380 63.5 2.0e-76 282.3
Mch2g1536 . 2 214 Glutathione S-transferase Gene Family AT2G02380 58.7 2.6e-71 265.4
Mch5g0313 . 19 227 Glutathione S-transferase Gene Family AT2G02380 54.1 6.3e-62 234.2
Mch10g0828 . 1 237 Glutathione S-transferase Gene Family AT5G41210 70.5 1.6e-95 345.9
Mch10g0828 . 1 237 Glutathione S-transferase Gene Family AT5G41240 69.2 4.1e-92 335.9
Mch5g1798 . 3 237 Glutathione S-transferase Gene Family AT5G02780 67.4 1.6e-87 319.3
Mch5g1796 . 9 228 Glutathione S-transferase Gene Family AT5G02780 69.4 3.7e-84 308.1
Mch9g1619 . 76 295 Glutathione S-transferase Gene Family AT5G02780 66.7 4.9e-81 297.7
Mch9g1619 . 29 296 Glutathione S-transferase Gene Family AT3G55040 59.1 8.5e-83 303.9
Mch5g1798 . 7 238 Glutathione S-transferase Gene Family AT3G55040 59.1 4.1e-77 285.0
Mch5g1796 . 1 226 Glutathione S-transferase Gene Family AT3G55040 55.9 1.5e-71 266.5
Mch5g1798 . 4 237 Glutathione S-transferase Gene Family AT5G02790 68.4 9.5e-93 336.7
Mch5g1796 . 3 228 Glutathione S-transferase Gene Family AT5G02790 68.3 9.2e-88 320.1
Mch9g1619 . 70 295 Glutathione S-transferase Gene Family AT5G02790 63.4 3.8e-81 298.1
Mch9g1596 . 1 213 Glutathione S-transferase Gene Family AT1G19570 70.1 3.0e-85 311.6
Mch9g1595 . 1 211 Glutathione S-transferase Gene Family AT1G19570 67.9 3.1e-82 301.6
Mch8g2308 . 64 272 Glutathione S-transferase Gene Family AT1G19570 60.0 2.4e-71 265.4
Mch9g1595 . 1 212 Glutathione S-transferase Gene Family AT1G75270 72.8 9.9e-89 323.2
Mch9g1596 . 1 212 Glutathione S-transferase Gene Family AT1G75270 72.3 2.7e-86 315.1
Mch8g2308 . 64 272 Glutathione S-transferase Gene Family AT1G75270 62.4 3.4e-73 271.6
Mch8g2308 . 5 275 Glutathione S-transferase Gene Family AT5G16710 67.4 8.0e-101 363.6
Mch9g1595 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.6 5.4e-73 271.2
Mch9g1596 . 3 211 Glutathione S-transferase Gene Family AT5G16710 58.6 5.6e-70 261.2
Mch11g0857 . 1 268 Glutathione S-transferase Gene Family AT1G77290 68.3 4.2e-105 377.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000291 5 5 16 3 3 4 0 3 4 5 2 4 5 4 5 5 4 4 3 4 3 8 4 5 5 8 2 4 1 17 145