Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1025 ATGCCGCAAGATCATCCAAGGAAGGAGGCCAGGGAAATAAACTTTTTTACTGAATACGGGGATGCTAATAGATACAAGATTCTTGAAGTTATTGGAAAAGGAAGTTATGGAGTTGTCTGTGCTGCTCTTGACATGCAAACTGGGCAGAAAGTTGCAATAAAGAGGATTCATGATATTTTTGATCACATATCTGATGCTATTCGAATTCTCCGTGAAGTTAAGTTGCTTAGATTGTTACGGCATCCTGATATAGTTGAGATCAAACACATTATGTTGCCACCTTCTAAAAGAGAATTTAAAGACATTTATGTGGTTTTTGAGCTACTGGAATCTGATCTTCATCAAGTTATTAAAGCAAATGATGACTTGACCCGTGAACATCATCAGTTCTTTCTTTATCAGATGCTACGTGCATTGAAATTTATGCATGCAGCAAATGTATATCATAGAGATTTAAAGCCGAAGAATATATTGGCCAATGCCAATTGCAAGCTTAAAATCTGTGATTTTGGACTTGCGAGAGTTGCTTTCAGTGACGTCCCAACTACAATATTTTGGACAGACTATGTTGCTACTAGATGGTACAGAGCTCCGGAGCTGTGTGGATCATTTTGTTCCAAGTATACTCCCGCGATAGATATTTGGAGCATTGGATGTATATTTGCTGAAGTGTTGACGGGGAAGCCATTGTTTCCTGGTAAAAGCGTCGCCCATCAGTTGGATTTGATTACTGATCTTCTCGGGACTCCCTCATTGGAAACCATTGCAGGAGTTCGGAACGAAAAGGCTAGGAAATATTTGACAGAAATGAGAAAGAAACCTGCAGTTCCATTTTCACAAAGATTTTCCAATGCGGATCCTACAGCCATCCGTTTATTGCAAAGGCTATTAGCTTTTGATCCAAAGGATCGACCATCGGCTGTGGAGGCTTTGGCTGATCCTTACTTTAAGGGCCTAGCCAAAGTTGAAAGAGAGCCATCTTGTCAGCCAATCTCAAGATCGGAATTCGAGTTTGAGAGACGGAAATTAACAAAGGATGATGTAAGGGAACTATTATACAGAGAAATATTAGAATACCATCCTCAAATTCGTGAAGATTATTTGATTGGAGAGACTACCAAGCTCCTCTATCCCAGTGTTACTAGTCAGTTCAAAAACCAATTCACCTACCACAAGGAGAATGGTGGTAAAAGCGCACCTGTTTTGCCTCTCGAACGGAAACACTTCTCCCTCCCACGGTCTACTGTTTGCACAAACTTGGTTTCACCTGACCGTGAGCCGGTTCGACGAAATCCCAAAGTCCCAAACAATAGTATGGGATTACCTGATAGAAAATTTGGGAATCCATCAAAGGCTCATCATCCTCCACCCAAAGTGCCCACTGGACGAGTTTCTGGGCCGATCCTCCCGTACGAGAACAGAAACATAAAAGACGTTTACTCGAGACTAACGTCGCAAATTAGAAGTTTGGATTTGTGA 1479 41.31 MPQDHPRKEAREINFFTEYGDANRYKILEVIGKGSYGVVCAALDMQTGQKVAIKRIHDIFDHISDAIRILREVKLLRLLRHPDIVEIKHIMLPPSKREFKDIYVVFELLESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHAANVYHRDLKPKNILANANCKLKICDFGLARVAFSDVPTTIFWTDYVATRWYRAPELCGSFCSKYTPAIDIWSIGCIFAEVLTGKPLFPGKSVAHQLDLITDLLGTPSLETIAGVRNEKARKYLTEMRKKPAVPFSQRFSNADPTAIRLLQRLLAFDPKDRPSAVEALADPYFKGLAKVEREPSCQPISRSEFEFERRKLTKDDVRELLYREILEYHPQIREDYLIGETTKLLYPSVTSQFKNQFTYHKENGGKSAPVLPLERKHFSLPRSTVCTNLVSPDREPVRRNPKVPNNSMGLPDRKFGNPSKAHHPPPKVPTGRVSGPILPYENRNIKDVYSRLTSQIRSLDL 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7448586 7453428 - MC10g0872 Mch10g1025 678118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1025 492 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1025 492 FunFam Mitogen-activated protein kinase 14 119 - -
Mch10g1025 492 MobiDBLite consensus disorder prediction 422 469 - -
Mch10g1025 492 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Mch10g1025 492 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Mch10g1025 492 SMART serkin_6 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1025 492 FunFam Mitogen-activated protein kinase 340 362 - -
Mch10g1025 492 Coils Coil 106 126 - -
Mch10g1025 492 FunFam Mitogen-activated protein kinase 111 339 - -
Mch10g1025 492 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1025 492 SUPERFAMILY Protein kinase-like (PK-like) 20 320 IPR011009 -
Mch10g1025 492 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1025 492 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 22 357 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Mch10g1025 492 CDD STKc_TDY_MAPK 24 361 - -
Mch10g1025 492 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1025 Mch-Chr10:7448586 Mch2g0720 Mch-Chr2:4907398 1.24E-252 dispersed
Mch3g1791 Mch-Chr3:19105151 Mch10g1025 Mch-Chr10:7448586 9.60E-28 transposed
Mch10g1025 Mch-Chr10:7448586 Mch4g0061 Mch-Chr4:437982 3.82E-252 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77017 PF00069 Pkinase 1.60E-64 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1025 - - - 0.0