Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1031 ATGAAGATTCAGTGCAATGTCTGCGAGGTGGCGGAGGCCACCGTACTGTGTTGTGCCGATGAGGCGGCGTTGTGCTGGGCCTGCGACGAGAAGATTCACGCCGCCAACAAGCTCGCCAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCGTCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCCAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGGAAGTGTGATGTTGCTATACACACGGCAAATACTTATGTTTCTGCTCATCAGCGCTTTCTGCTTACTGGTGTGAAAGTGGCACTTGAGCCAACTGACCCTGTTGCATGTTCTTCCACGCCTAAGGCAGAATCTAGAGAGAAATCTACTGAGACAAAAGTTGTATCACGATCGTTACCTCAAAGAGAATTCTCCATACCCTCTCCTGGTGAACTCAGCAGGTCCCTGTCTATACCAATTGGATCTGAGGACTTTGTGCCAAATAAGATTTTTCTTTCTGGAGATTCTATTTCTGGTGGCTTTTCACAATGGCATATGGACGAATTTATTAATCTGACTGGATTCAACCAGAGTTATGGGTATATGGATAATGGATCATCCAAGGCTGATAGTGGTAAGCTAGGAGATTCTGATTCACCAGTTTTGAGAGCTGCCGAGGTCGAACTGGACGATGATGATGAGTGCTCAGGCCAGGTTCCAGAGGCTTCCTGGACTGTGCCTCAGATTCCCTCCCCACCCACAGCTTCTGGTTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCGGTTCCTCAGAAAGAGTCCAACATTGCTCACATAACGGTACATTTTCGAAACGCAGGAGGCAGTTCTAG 894 47.76 MKIQCNVCEVAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVSAHQRFLLTGVKVALEPTDPVACSSTPKAESREKSTETKVVSRSLPQREFSIPSPGELSRSLSIPIGSEDFVPNKIFLSGDSISGGFSQWHMDEFINLTGFNQSYGYMDNGSSKADSGKLGDSDSPVLRAAEVELDDDDECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISGSSERVQHCSHNGTFSKRRRQF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7504337 7507701 + MC10g0877 Mch10g1031 678124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1031 297 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Mch10g1031 297 CDD Bbox1_BBX-like 56 99 IPR049808 -
Mch10g1031 297 Gene3D Classic Zinc Finger 1 93 - -
Mch10g1031 297 FunFam B-box zinc finger protein 22 1 93 - -
Mch10g1031 297 MobiDBLite consensus disorder prediction 114 134 - -
Mch10g1031 297 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Mch10g1031 297 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Mch10g1031 297 Pfam B-box zinc finger 53 94 IPR000315 GO:0008270(InterPro)
Mch10g1031 297 CDD Bbox1_BBX-like 5 47 IPR049808 -
Mch10g1031 297 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Mch10g1031 297 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 276 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1031 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1031 Mch-Chr10:7504337 Mch7g0133 Mch-Chr7:1637820 1.45E-41 dispersed
Mch10g1031 Mch-Chr10:7504337 Mch8g0821 Mch-Chr8:5837414 6.98E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch2g0456 . 6 432 C2C2-CO-like Transcription Factor Family AT3G07650 54.7 3.0e-93 339.0
Mch4g0360 . 1 405 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 7.0e-90 327.8
Mch2g0456 . 6 432 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.3e-91 333.6
Mch4g0360 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 2.1e-86 316.2
Mch2g0456 . 6 432 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.3e-91 333.6
Mch4g0360 . 1 405 C2C2-CO-like Transcription Factor Family AT5G48250 55.8 2.1e-86 316.2
Mch4g0563 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 58.8 2.7e-53 206.1
Mch11g0147 . 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 52.2 1.3e-50 197.2
Mch10g1031 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 51.4 2.9e-76 282.3
Mch10g0804 . 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 62.2 2.3e-56 215.3
Mch1g1566 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 75.2 1.4e-48 189.5
Mch10g0804 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.9 3.5e-58 221.5
Mch1g1566 . 1 166 C2C2-CO-like Transcription Factor Family AT4G38960 62.0 4.6e-50 194.5
Mch4g0563 . 1 233 C2C2-CO-like Transcription Factor Family AT4G39070 50.4 2.9e-52 202.2
Mch8g0821 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.2 8.1e-47 184.1
Mch2g1076 . 1 198 C2C2-CO-like Transcription Factor Family AT4G39070 52.6 4.3e-40 161.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42492 PF00643 zf-B_box 8.90E-07 No_clan Mch TR