Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1031 ATGAAGATTCAGTGCAATGTCTGCGAGGTGGCGGAGGCCACCGTACTGTGTTGTGCCGATGAGGCGGCGTTGTGCTGGGCCTGCGACGAGAAGATTCACGCCGCCAACAAGCTCGCCAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCGTCTCAGATGCCCAAATGCGACATCTGCCAGGAAGCCAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGGAAGTGTGATGTTGCTATACACACGGCAAATACTTATGTTTCTGCTCATCAGCGCTTTCTGCTTACTGGTGTGAAAGTGGCACTTGAGCCAACTGACCCTGTTGCATGTTCTTCCACGCCTAAGGCAGAATCTAGAGAGAAATCTACTGAGACAAAAGTTGTATCACGATCGTTACCTCAAAGAGAATTCTCCATACCCTCTCCTGGTGAACTCAGCAGGTCCCTGTCTATACCAATTGGATCTGAGGACTTTGTGCCAAATAAGATTTTTCTTTCTGGAGATTCTATTTCTGGTGGCTTTTCACAATGGCATATGGACGAATTTATTAATCTGACTGGATTCAACCAGAGTTATGGGTATATGGATAATGGATCATCCAAGGCTGATAGTGGTAAGCTAGGAGATTCTGATTCACCAGTTTTGAGAGCTGCCGAGGTCGAACTGGACGATGATGATGAGTGCTCAGGCCAGGTTCCAGAGGCTTCCTGGACTGTGCCTCAGATTCCCTCCCCACCCACAGCTTCTGGTTTATACTGGCCAAGAAGTTACCATAATTCTATGGATGGTGCTGTTTTTGTTCCTGACATCTCCGGTTCCTCAGAAAGAGTCCAACATTGCTCACATAACGGTACATTTTCGAAACGCAGGAGGCAGTTCTAG 894 47.76 MKIQCNVCEVAEATVLCCADEAALCWACDEKIHAANKLASKHQRVPLSGSSSQMPKCDICQEASGYIFCLEDRALLCRKCDVAIHTANTYVSAHQRFLLTGVKVALEPTDPVACSSTPKAESREKSTETKVVSRSLPQREFSIPSPGELSRSLSIPIGSEDFVPNKIFLSGDSISGGFSQWHMDEFINLTGFNQSYGYMDNGSSKADSGKLGDSDSPVLRAAEVELDDDDECSGQVPEASWTVPQIPSPPTASGLYWPRSYHNSMDGAVFVPDISGSSERVQHCSHNGTFSKRRRQF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7504337 7507701 + MC10g0877 Mch10g1031 678124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1031 297 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Mch10g1031 297 CDD Bbox1_BBX-like 56 99 IPR049808 -
Mch10g1031 297 Gene3D Classic Zinc Finger 1 93 - -
Mch10g1031 297 FunFam B-box zinc finger protein 22 1 93 - -
Mch10g1031 297 MobiDBLite consensus disorder prediction 114 134 - -
Mch10g1031 297 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Mch10g1031 297 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Mch10g1031 297 Pfam B-box zinc finger 53 94 IPR000315 GO:0008270(InterPro)
Mch10g1031 297 CDD Bbox1_BBX-like 5 47 IPR049808 -
Mch10g1031 297 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Mch10g1031 297 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 276 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1031 Mch-Chr10:7504337 Mch7g0133 Mch-Chr7:1637820 1.45E-41 dispersed
Mch10g1031 Mch-Chr10:7504337 Mch8g0821 Mch-Chr8:5837414 6.98E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42492 PF00643 zf-B_box 8.90E-07 No_clan Mch TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1031 - - - 0.0