Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1052 ATGTCTCTTCGCAAATCGTTTCTCTCTCGGAAGTTCTCCTCCAAGTCGTCGCACAAGGATCCGAATGCTGCAGGAGGAATCGCCCGAGTCGCCGCCTCGGAGGTGGAAGATGACGCCGGTCAGCCGGGCGGGAGTGGCGACCGGATGCAGGGTGAATCTTCTTGGTCCTCCATGCTACCGGAGCTTCTTGGAGAGATCATTCAGCGAGTGGAGGCTTCCGAGGACCGTTGGCCTAACCGCAAAAACTTTGTTTCCTGCGCTTGTGTCTGCAAGCGTTGGAGGGACATTACTAAGGAGATCGCGAAGGCCGCCCATCATACTGGGAAGATCACTTTCCCTTCTTGCCTCAAACAGCCTGGACCAAGCGACCTTCCGCATCAGTGTCTTATAAAGAGGAACAAGAAGACTTCGACGTTTTACCTTTATCTTGCCCTTACACCATCATTTACAGATAAGGGGAAATTCCTCTTAGCTGCTCGGAGATATAGGCATGGAGCTCATACTGAGTATATAATATCACTTGATGCTGAAGACTTATCCCAAGGAAGCAATGCTTACGTGGGAAAGTTAAGCTCCGATTTTCTTGGCACCAATTTTACAATTTATGATAGCCAACCTCCACATAACGGTGCAAAGCCATCAAATAGTAAAGCAAGTCGCCGCTTTGCGAGCAAGCAGATTAGCCCACAAGTTTCTGCAGGTAACTTTGAGGTCGGGCAAGTCTCGTACAAATTTAATCTCTTGAAATCAAGAGGCCCCAGGAGAATGATATGCTCTCTAAAGTGCCCAATATCAGAAGACACTGGCACCAGTAAACAACCTTGCGAGGACTTGAAGATGAAGAAACCTGAGGCGGGTCCTTCTTCTTCTGGGTCGACAGTCTTGAGAAACAAAGCTCCTAGATGGCATGAGCACCTGCAATGCTGGTGCTTGAATTTTCACGGTCGGGTGACAGTAGCGTCAGTTAAAAACTTCCAACTTGTTGCTACCATCGACCATAGCCAGCCAGGAGGTAAAGGGGACGAGGAGACCGTCCTCCTTCAGTTTGGGAAGGTAGGTGATGATATCTTTACTATGGATTATAGGCAGCCATTATCTGCATTTCAGGCATTCGCCATTTGCCTTACGAGCTTCGGCACGAAGTTGGCGTGCGAG 1155 49.18 MSLRKSFLSRKFSSKSSHKDPNAAGGIARVAASEVEDDAGQPGGSGDRMQGESSWSSMLPELLGEIIQRVEASEDRWPNRKNFVSCACVCKRWRDITKEIAKAAHHTGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRHGAHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSNSKASRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPISEDTGTSKQPCEDLKMKKPEAGPSSSGSTVLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATIDHSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7666224 7670690 - MC10g0896 Mch10g1052 678145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1052 385 CDD F-box_AtTLP-like 55 99 - -
Mch10g1052 385 ProSitePatterns Tub family signature 2. 370 385 IPR018066 -
Mch10g1052 385 PANTHER TUBBY-RELATED 33 384 - -
Mch10g1052 385 MobiDBLite consensus disorder prediction 268 294 - -
Mch10g1052 385 Pfam F-box domain 56 98 IPR001810 GO:0005515(InterPro)
Mch10g1052 385 MobiDBLite consensus disorder prediction 1 54 - -
Mch10g1052 385 SUPERFAMILY Tubby C-terminal domain-like 105 385 IPR025659 -
Mch10g1052 385 Gene3D Tubby Protein; Chain A 111 385 IPR025659 -
Mch10g1052 385 Gene3D - 49 101 - -
Mch10g1052 385 PRINTS Tubby superfamily signature 342 361 IPR000007 -
Mch10g1052 385 PRINTS Tubby superfamily signature 363 385 IPR000007 -
Mch10g1052 385 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Mch10g1052 385 PRINTS Tubby superfamily signature 313 329 IPR000007 -
Mch10g1052 385 PRINTS Tubby superfamily signature 295 312 IPR000007 -
Mch10g1052 385 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Mch10g1052 385 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Mch10g1052 385 ProSitePatterns Tub family signature 1. 313 326 IPR018066 -
Mch10g1052 385 Pfam Tub family 116 380 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1052 Mch-Chr10:7666224 Mch5g0669 Mch-Chr5:4512248 5.02E-124 dispersed
Mch10g1052 Mch-Chr10:7666224 Mch7g1139 Mch-Chr7:15273539 6.75E-129 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42494 PF01167 Tub 1.60E-102 CL0395 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1052 K19600 - csv:101211968 639.802