Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1067 ATGAGTCCAGCAAACTGTTTTTGGACAATATTCAAGCAACGAAAGGTGAAGCGAGTTACAAGCAATGGAGAACAGGTACACTTAGATACTGGAAAATCCAGTGGTTCCCCAAATGGGAAGAGTGAAGATCTAGCTGCATCTCGAATTCAAAATGCATTTCGGGCATTTACGGCCAGAAAAATTGTACATAATTCGAAGGGGCCAGAGAGATTCCAGGATATAATTCAAGGTGAAACAGCTACAAAGCAAGTATTAAGCTTCATTCATTCATGGAGCAGAATGCAACAGGAAATTGGAGCTCGTAGATTATGTATGGTCACAGAATATCGAGTCAAGCAAAAGAAACTGGAAAATCAGCTGAAGCTTGAGGCTAAAATTCATGAACTTGAGATAGAATGGTGTGGTGGGTCTGAAACAAAGGAGGAAATCCTTTCTAAGATTCAACAACGAGAAGAAGCTGCTGTGAGACGAGAGCGAGCCATGGCTTATGCATTCTCCCATCAGTGGAGGGCCAACTCCATCTTACATGTAAGTCCGACTTCATTCAGCCTTGACAAAGAAAATTGGGGATGGAGCTGGAAGGAGAGATGGATTGCTGCTCGGCCATGGGAGATTCGAGCTAACGCTCATCCCACCATTCCAAAGAAGGTGCAGATGAAGAAAACAAGCAAACTCGAAAAAGTCTTGACAGGACAACCAAAGGTCTTAAACTCAGCCAGACATTCTTTGTCAAATGGCAAGGGAAGTTCAAAGGCCAGAACTTCTGCTATATCCGACCACTGA 783 43.42 MSPANCFWTIFKQRKVKRVTSNGEQVHLDTGKSSGSPNGKSEDLAASRIQNAFRAFTARKIVHNSKGPERFQDIIQGETATKQVLSFIHSWSRMQQEIGARRLCMVTEYRVKQKKLENQLKLEAKIHELEIEWCGGSETKEEILSKIQQREEAAVRRERAMAYAFSHQWRANSILHVSPTSFSLDKENWGWSWKERWIAARPWEIRANAHPTIPKKVQMKKTSKLEKVLTGQPKVLNSARHSLSNGKGSSKARTSAISDH 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7794760 7806766 - MC10g0909 Mch10g1067 678160

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1067 260 MobiDBLite consensus disorder prediction 230 260 - -
Mch10g1067 260 MobiDBLite consensus disorder prediction 23 42 - -
Mch10g1067 260 PANTHER IQ-DOMAIN 5-RELATED 33 243 - -
Mch10g1067 260 ProSiteProfiles IQ motif profile. 42 70 - -
Mch10g1067 260 Coils Coil 112 132 - -
Mch10g1067 260 MobiDBLite consensus disorder prediction 22 42 - -
Mch10g1067 260 MobiDBLite consensus disorder prediction 235 260 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1067 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1067 Mch-Chr10:7794760 Mch6g1311 Mch-Chr6:10866131 7.33E-33 dispersed
Mch10g1067 Mch-Chr10:7794760 Mch4g2077 Mch-Chr4:22941834 9.26E-31 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1765 . 111 276 IQD Protein Family AT3G09710 54.1 6.8e-42 168.7
Mch4g2077 . 1 475 IQD Protein Family AT3G52290 54.6 4.4e-104 375.2
Mch6g1311 . 3 411 IQD Protein Family AT3G22190 56.9 8.2e-95 344.4
Mch11g0421 . 72 508 IQD Protein Family AT2G26180 59.5 3.7e-116 415.2
Mch10g1067 . 40 215 IQD Protein Family AT2G33990 55.3 7.2e-49 191.0
Mch10g1067 . 17 216 IQD Protein Family AT3G15050 56.2 1.2e-56 216.9
Mch4g1577 . 128 475 IQD Protein Family AT5G13460 50.7 5.4e-73 271.9
Mch7g0083 . 106 486 IQD Protein Family AT2G43680 53.4 1.2e-87 321.2
Mch5g0018 . 1 508 IQD Protein Family AT4G00820 55.1 2.0e-122 436.4
Mch5g0018 . 1 508 IQD Protein Family AT1G01110 53.4 1.4e-120 430.3
Mch9g0298 . 1 397 IQD Protein Family AT3G16490 52.8 3.3e-74 275.8
Mch6g0862 . 1 394 IQD Protein Family AT3G16490 51.2 7.1e-69 258.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30