Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1082 TCAGAGGTGATGGTGCTAAATCTAGTCAAAATGACCTTTCAAACATGGATAATCTTGACTTGCTTGCTTTCTTTTTCCTTGGGTCTGAAACCGCCTAATCAAATCGTCTGTGATCCAAAAGATTTGTTGGCGTTGAGGGGCTTTGTGAAAGGCCTTACAAATAGCTCTATTCTCTCTGTTTGGTTGAATGAATCCAGCTGCTGCAGTTGGGATGGTGTCGATTGTGGATTTTATGGCAACACCTCTCTCACTGACAGAGTGACCAAGTTGGTACTGCCTAACATGAATCTGAAAGGGAAGATTTCACAATCGCTTGCTGGTTTAGATCAGTTAATTTGGTTAAATCTGTCGTACAATCAGCTTGAAGGAGGATTGCCAACAGAATTCTCAAGCTTGAAGCAGCTCCAGGTTCTCGATTTGAGCTACAATAAGCTATCAGGACCAGTCACCAATGCAACTTCAGGGTTGAAATCTGTCCGTATTCTGAATATTTCCAGCAATTCATTCGCTGGGGATTTTCCCCAGCTTATGGGATTTCAAAATATAGCTGCCTTCAATATAAGTAACAATTCTTTCACAGGCGAGGTTTCTTCACAGATTTGCAATTCCTCCAATGTGATTCAGGTTGTCGATATATCACTGAACCGAATATCCGGTGTTCTTCAAGATATGGAGAATTGCAGCAAATCCCTCAAACATTTCCGTGCAGACTACAACTTACTTACCGGAAATCTTCCAGATTCTTTGTATTCATTATCGTCTTTGGAGTACTTCTCGATCCCTGGGAACAGCTTATTTGGCCAATTAAGCATGGAACTGAGTAAGCTTTCTAGGCTTAAATCCTTTATAATATTTGGAAACAAGTTTTCTGGTGAACTTCCAAATGTGTTTGGTAATTTTTCAGAATTACAGGAGTTAGTTGGACATTCTAACTTGTTCTCTGGAATATTGCCTTCATCTCTGTCATTATGCTCAAAACTCCGAGTGTTTGATCTTAGGAACAATACTTTAACTGGTACTATCGATCTCAATTTTTCTAGATTACCAGATCTCCAGATGCTTGATCTAGCCTCTAATCACTTTTCTGGGGCTCTACCAAATTCTCTATCCGATTGCCATGAACTGAAAACTCTCAGCCTTGCCAAAAACAACTTAACCGGTCAAATTCCTCGAGATTACTCGAAGCTTTCCTCTCTGACATTTCTATCTTTGTCGAACAACAGTATTGTAAACTTGGGCGGTGCATTATCTGTTCTACAGAATTGCAAAAACCTGACCATTCTTATTCTTACAAAGAACTTCCGTAATGAGGAAATTCCACAAACTGCAACTGTTTTCAATAATTTAACGCTTTTGGCATTTGGTTATTGTGGTCTGAAAGGACCAATTCCTGGTTGGTTACAAGGTTGCAAGAAATTAAGTATCCTCGATTTGTCTTGGAATCACTTAAATGGCAGTATCCCTCCTTGGATTGGTCAGCTGGAGAATTTGTTTTATTTGGATTTGTCCAACAATTCTCTGACAGGAGAAATCCCAAAAAGTTTGACACGGATGAAAGCACTAATTTCCAAAAACTGCAGCTCTTCCAGTTCAACATCATCCGCTGGAATCCCCCTTTTTGTCAAAAGAAATCAAAGTTCTACTGGTTTGCAATACAACCAGGCGTCAAGCTTTCCACCATCGATTTACTTGAGCTACAACAGAATAAATGGAACTATTTTACCAGAAATTGGAAGATTGAAATGGTTGCATGTCTTGGATTTGAGTCGAAATGATATTACTGGGTCCATCCCGAGCACTATATCAGAGATGGAGAACTTGGAAACATTAGATTTGTCAAATAATGATCTTTATGGACGAATTCCTCCATCATTCGACAAGCTCACATTCCTGTCAAAGTTTAGTGTGGCAAATAATCACTTGGAGGGACCAATTCCAAATGGAGGACAATTCTTAAGCTTTCCCACCTCAAGTTTTGAGGGCAATGCAGGACTTTGCGGGGAAATTGATGACCCTTGTCACTCTGTTAATGGATTAGGAACAAAACCCGAAACCTCCACTGGTTCAAAGAGAAAAATTGGTAAAAGCGTCATTCTTTGCCTTACAGTCGGTGCAGCTGCAGCAGTCCTCCTGCTCCTTACAGTGGTTCTACTCAAAATGTCCAGGAAAGACGTTCGAGATCAAAATAACAGTTTCGATGAGGAGTTTAACACACGCGACAGGTTATCTGGAGCTCTCGGATCATCAAAGTTGGTGCTCTTTCAAAATTCAGAATGCAGGGATCTTACGGTATCAGAGTTGTTAAAAGCTACTAGCAATTTCAACCAGGCAAACATAATCGGTTGTGGTGGATTTGGCCTGGTTTACAAAGCCAACCTTCCCAATGGTTCAAAAGCTGCAGTCAAGAGGCTTACAGGAGATTGTGGTCAGATGGAGCGGGAATTCCAAGCTGAAGTAGAAGCTCTTTCTCGAGCGCAGCATAAGAACCTTGTTTCACTGCAAGGTTACTGCAAACATGGAAATGACAGGCTACTAATCTACTCCTACATGGAGAATGGAAGCTTGGACTACTGGCTCCATGAGATTGTTGACAATGAGTCGATACTAAAATGGGAAGCAAGACTCAAAATCGCACAAGGTGCTGCTCATGGATTGGCTTACCTGCACAAGGAATGTCAGCCAAACATAATTCACCGAGACGTAAAATCAAGCAACATACTTCTAGATGACAGATTCGAGGCTCATTTAGCTGATTTTGGTCTTTCGAGATTACTCCGGCCATATGATACCCACGTTACCACGGACTTGGTTGGGACTTTGGGTTATATTCCTCCTGAATACAGCCAAACATTAACTGCAACATGCAGGGGTGATGTGTACAGTTTTGGAGTTGTTCTTCTTGAGCTCCTTACTGGTCGGAGGCCAGTAGAGGTATGCAAAGGAAAAGCCTGCAGGGATCTAGTGTCTTGGGTGATTCAGAAGAAATCAGAAAAGAGAGAAGAGGAGATTGTTGATCCTGCAATTTGGGATACAAATAGCAAAAAACAGATTTTAGAGGTTCTAAGTATTACTTGTAAATGCATAGACCAAGATCCAAGGAAGAGACCTTCGATTGAAGAAGTTTCTTCTTGGCTAGATGGTGTTACA 3147 41.05 SEVMVLNLVKMTFQTWIILTCLLSFSLGLKPPNQIVCDPKDLLALRGFVKGLTNSSILSVWLNESSCCSWDGVDCGFYGNTSLTDRVTKLVLPNMNLKGKISQSLAGLDQLIWLNLSYNQLEGGLPTEFSSLKQLQVLDLSYNKLSGPVTNATSGLKSVRILNISSNSFAGDFPQLMGFQNIAAFNISNNSFTGEVSSQICNSSNVIQVVDISLNRISGVLQDMENCSKSLKHFRADYNLLTGNLPDSLYSLSSLEYFSIPGNSLFGQLSMELSKLSRLKSFIIFGNKFSGELPNVFGNFSELQELVGHSNLFSGILPSSLSLCSKLRVFDLRNNTLTGTIDLNFSRLPDLQMLDLASNHFSGALPNSLSDCHELKTLSLAKNNLTGQIPRDYSKLSSLTFLSLSNNSIVNLGGALSVLQNCKNLTILILTKNFRNEEIPQTATVFNNLTLLAFGYCGLKGPIPGWLQGCKKLSILDLSWNHLNGSIPPWIGQLENLFYLDLSNNSLTGEIPKSLTRMKALISKNCSSSSSTSSAGIPLFVKRNQSSTGLQYNQASSFPPSIYLSYNRINGTILPEIGRLKWLHVLDLSRNDITGSIPSTISEMENLETLDLSNNDLYGRIPPSFDKLTFLSKFSVANNHLEGPIPNGGQFLSFPTSSFEGNAGLCGEIDDPCHSVNGLGTKPETSTGSKRKIGKSVILCLTVGAAAAVLLLLTVVLLKMSRKDVRDQNNSFDEEFNTRDRLSGALGSSKLVLFQNSECRDLTVSELLKATSNFNQANIIGCGGFGLVYKANLPNGSKAAVKRLTGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCKHGNDRLLIYSYMENGSLDYWLHEIVDNESILKWEARLKIAQGAAHGLAYLHKECQPNIIHRDVKSSNILLDDRFEAHLADFGLSRLLRPYDTHVTTDLVGTLGYIPPEYSQTLTATCRGDVYSFGVVLLELLTGRRPVEVCKGKACRDLVSWVIQKKSEKREEEIVDPAIWDTNSKKQILEVLSITCKCIDQDPRKRPSIEEVSSWLDGVT 1049
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7953754 7956900 - MC10g0923 Mch10g1082 678175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1082 1049 ProSitePatterns Protein kinases ATP-binding region signature. 780 802 IPR017441 GO:0005524(InterPro)
Mch10g1082 1049 Gene3D Ribonuclease Inhibitor 562 669 IPR032675 -
Mch10g1082 1049 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch10g1082 1049 PRINTS Leucine-rich repeat signature 497 510 - -
Mch10g1082 1049 PRINTS Leucine-rich repeat signature 604 617 - -
Mch10g1082 1049 FunFam Tyrosine-sulfated glycopeptide receptor 1 345 678 - -
Mch10g1082 1049 Gene3D Ribonuclease Inhibitor 157 390 IPR032675 -
Mch10g1082 1049 SUPERFAMILY L domain-like 37 306 - -
Mch10g1082 1049 SUPERFAMILY L domain-like 316 666 - -
Mch10g1082 1049 Gene3D Ribonuclease Inhibitor 40 156 IPR032675 -
Mch10g1082 1049 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 246 341 - -
Mch10g1082 1049 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 32 1048 IPR050647 -
Mch10g1082 1049 Gene3D Transferase(Phosphotransferase) domain 1 850 1048 - -
Mch10g1082 1049 FunFam Phytosulfokine receptor 1 737 849 - -
Mch10g1082 1049 ProSiteProfiles Leucine-rich repeat profile. 398 420 IPR001611 GO:0005515(InterPro)
Mch10g1082 1049 Pfam Leucine Rich Repeat 326 348 IPR001611 GO:0005515(InterPro)
Mch10g1082 1049 Pfam Leucine Rich Repeat 472 494 IPR001611 GO:0005515(InterPro)
Mch10g1082 1049 Pfam Leucine Rich Repeat 496 517 IPR001611 GO:0005515(InterPro)
Mch10g1082 1049 Gene3D Ribonuclease Inhibitor 391 539 IPR032675 -
Mch10g1082 1049 FunFam Nuclear pore complex protein NUP107 38 179 - -
Mch10g1082 1049 SUPERFAMILY Protein kinase-like (PK-like) 754 1045 IPR011009 -
Mch10g1082 1049 Pfam Protein kinase domain 775 1041 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1082 1049 SMART LRR_typ_2 494 518 IPR003591 -
Mch10g1082 1049 SMART LRR_typ_2 396 419 IPR003591 -
Mch10g1082 1049 SMART LRR_typ_2 108 131 IPR003591 -
Mch10g1082 1049 SMART LRR_typ_2 604 627 IPR003591 -
Mch10g1082 1049 SMART LRR_typ_2 348 371 IPR003591 -
Mch10g1082 1049 SMART LRR_typ_2 132 155 IPR003591 -
Mch10g1082 1049 SMART serkin_6 774 1045 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1082 1049 Pfam Leucine rich repeat N-terminal domain 39 75 IPR013210 -
Mch10g1082 1049 FunFam Leucine-rich repeat receptor-like protein kinase 850 1049 - -
Mch10g1082 1049 CDD STKc_IRAK 780 1041 - -
Mch10g1082 1049 ProSiteProfiles Protein kinase domain profile. 774 1045 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1082 1049 Pfam Leucine rich repeat 351 409 IPR001611 GO:0005515(InterPro)
Mch10g1082 1049 Pfam Leucine rich repeat 86 145 IPR001611 GO:0005515(InterPro)
Mch10g1082 1049 Pfam Leucine rich repeat 583 641 IPR001611 GO:0005515(InterPro)
Mch10g1082 1049 Gene3D Phosphorylase Kinase; domain 1 727 849 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1082 Mch-Chr10:7953754 Mch9g0491 Mch-Chr9:3621434 1.60E-150 dispersed
Mch6g0625 Mch-Chr6:4229374 Mch10g1082 Mch-Chr10:7953754 2.14E-56 dispersed
Mch10g0170 Mch-Chr10:1013841 Mch10g1082 Mch-Chr10:7953754 6.89E-83 transposed
Mch3g1301 Mch-Chr3:15904525 Mch10g1082 Mch-Chr10:7953754 2.75E-39 transposed
Mch4g1507 Mch-Chr4:18554108 Mch10g1082 Mch-Chr10:7953754 1.13E-22 transposed
Mch9g0537 Mch-Chr9:3948823 Mch10g1082 Mch-Chr10:7953754 1.73E-17 transposed
Mch1g1928 Mch-Chr1:19132348 Mch10g1082 Mch-Chr10:7953754 1.40E-64 wgd
Mch10g1082 Mch-Chr10:7953754 Mch4g0126 Mch-Chr4:830538 1.36E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77020 PF00069 Pkinase 1.10E-44 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1082 K27626 - mdm:103413298 1390.17