Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1090 ATGGGTTGCGTTTGTTGTAAGCCCTCTGCTATAGAAGATAGCAAGGAGAGCCCAAGGGAGAGATTGTCAAGTAAGACCTCCTCCGACCTGCGGGTGGCAAGAGTGACTTCGTCATCGAGGGAGGAAGCTTATCGATCTAAAGATCAGCATGATGGTAATGATGCAAGAGTGGTGTTGATTGACAAGCAGGTGAATGGGTCGGGTCGACTGCAGAGTGAGAATCTTGAGAGGAAGCGAGAGAAGATGGAGTATCTGGGTGCTCAACATCCTGCAATGGGTAGAATTCCGAAGGCAGCAGAGGGGGATCACATTGCTGCAGGGTGGCCACCGTGGCTGGCTGCAGTTGCTGGAGAGGCAATCAGAGGGTGGTTACCCCGACGGGCCGATTCTTTTGAGAAATTGGATAAAATTGGCCAAGGAACTTATAGTAATGTATATAGGGCTCGTGACCTTGACCAAAAGAAAATTGTTGCTCTGAAGAAAGTAAGGTTTGACAACCTGGAACCTGAGAGTGTGCGCTTTATGGCAAGGGAAATCCACATTTTGCGAAGACTTGATCATCCGAATGTGATAAAGTTAGAAGGTCTAGTTACATCAAGGATGTCTTGCAGCCTCTATCTTGTTTTTGAGTACATGGAACATGACTTGGCTGGACTAGCTTCACACCCTGGTCTGAAGTTTACAGAATCTCAGGTCAAATGTTACATGCAACAACTTTTACGTGGCCTTGATCATTGCCACAGTCATGGAGTTCTACACCGTGATATAAAGGGCTCCAATCTTTTGATTGACAATAATGGCATTTTGAAAATTGCAGACTTTGGTCTAGCAAGTTTTTTTGATATCCACCAAAATCAGCCACTGACAAGCCGGGTTGTAACTCTTTGGTATCGACCACCTGAGCTTTTACTTGGTGCCACGTATTATGGTACAGCTGTAGATTTGTGGAGCACTGGCTGCATACTCGCTGAATTGTATGCTGGCAAGCCCATTATGCCAGGAAGAACAGAGGTGGAACAGCTACATAAAATATTTAAGCTATGTGGCTCACCATCAGAGGATTATTGGAGAAAATCAAGGTTGCCACATGCGACCATATTTAAGCCCCAACAGCCCTATAGGCGCTGTGTTGCAGACACATTTAAGGATTTCCCTGCACCAGCTTTAGCTCTTATTGAGACGTTACTCTCTATAGATCCTGCTGATCGTGGGTCTGCTGCTCTTGCCCTTAAAAGCGAATTCTTTTCAACAAAGCCACTTCCGTGTGATCCTTCTAGCTTGCCGAAGTATCCTCCCAGCAAAGAATTTGATGCTAAGATAAGGGATGAGGAGGCCAGAAGACAAGGAGCAGTTGGAAGCAAGGGACATCGACTAGACCTCCAAAGGAAAGATAGAGAGTCTCGAGCCGTCCCTGCACCAGATGCCAATGCTGAGTTAGCCTCGTCAATGCAGAAAAGACAAGGCCAGTCAAATTCGAAGAGCCGGAGCGAGAAGTTTAACCCACATCCCGAAGAAGCATCTGGCTTCCCAATTGATCCACCTAGACCTTCACAAGGAGCAGATGTAAGACTGGATTCTCAGGGGCGTCATCCCAAGAAAGCCTCACATTCAGGGCCACTTGCTCAGCGGGCTGCTTGGGCAAAGGCCAGTAAGAACCCAGATGATGCTCCAAAAATCTCAACCGGGGCCGACTCTTTCACAACTACAGGACTAGTAGCAGCTAGAAGAAGTATGCTGGCAGAAGATTGCAGGGAAAAATCTGACTCTTCACAAGGAGAGGTTCAAAAACTAATCGGCAGGTTTCCCGGTTCCTTCAAAGAAACCTCAGAGTCGTCGATGGTACCAGATCAGAAGTTCTCAAATCATAGTATTGTAGGCTCACACGACAAAGAAAGGAGCAGCACCAAAGACCCTATTCTTGTAAGTTATGGCTCAAAGGGTCATAAGATTCATTACTCTGGTCCATTGCTGGTTCCTTCTGGCAACATGGACCAAATGTTGAAGGACCACGATCGTCATATCCAAGAAGCCGTAAGACGGGCTCGGCTTGACAAAGCT 2058 46.89 MGCVCCKPSAIEDSKESPRERLSSKTSSDLRVARVTSSSREEAYRSKDQHDGNDARVVLIDKQVNGSGRLQSENLERKREKMEYLGAQHPAMGRIPKAAEGDHIAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTESQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNNGILKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIETLLSIDPADRGSAALALKSEFFSTKPLPCDPSSLPKYPPSKEFDAKIRDEEARRQGAVGSKGHRLDLQRKDRESRAVPAPDANAELASSMQKRQGQSNSKSRSEKFNPHPEEASGFPIDPPRPSQGADVRLDSQGRHPKKASHSGPLAQRAAWAKASKNPDDAPKISTGADSFTTTGLVAARRSMLAEDCREKSDSSQGEVQKLIGRFPGSFKETSESSMVPDQKFSNHSIVGSHDKERSSTKDPILVSYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKA 686
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8041558 8047888 - MC10g0930 Mch10g1090 678183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1090 686 MobiDBLite consensus disorder prediction 35 54 - -
Mch10g1090 686 MobiDBLite consensus disorder prediction 1 54 - -
Mch10g1090 686 SMART serkin_6 131 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1090 686 FunFam probable serine/threonine-protein kinase At1g54610 214 455 - -
Mch10g1090 686 CDD STKc_CDK9_like 131 415 - -
Mch10g1090 686 MobiDBLite consensus disorder prediction 605 635 - -
Mch10g1090 686 SUPERFAMILY Protein kinase-like (PK-like) 125 423 IPR011009 -
Mch10g1090 686 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1090 686 MobiDBLite consensus disorder prediction 605 622 - -
Mch10g1090 686 MobiDBLite consensus disorder prediction 444 563 - -
Mch10g1090 686 PANTHER CELL DIVISION PROTEIN KINASE 130 415 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Mch10g1090 686 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524(InterPro)
Mch10g1090 686 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1090 686 FunFam probable serine/threonine-protein kinase At1g54610 118 213 - -
Mch10g1090 686 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Mch10g1090 686 MobiDBLite consensus disorder prediction 12 27 - -
Mch10g1090 686 MobiDBLite consensus disorder prediction 444 471 - -
Mch10g1090 686 MobiDBLite consensus disorder prediction 480 496 - -
Mch10g1090 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch10g1090 686 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1090 Mch-Chr10:8041558 Mch2g0641 Mch-Chr2:4396942 6.86E-250 dispersed
Mch11g1889 Mch-Chr11:18731472 Mch10g1090 Mch-Chr10:8041558 1.27E-200 transposed
Mch2g0040 Mch-Chr2:321771 Mch10g1090 Mch-Chr10:8041558 3.56E-113 transposed
Mch8g3155 Mch-Chr8:33811609 Mch10g1090 Mch-Chr10:8041558 7.14E-36 transposed
Mch10g1090 Mch-Chr10:8041558 Mch4g0128 Mch-Chr4:846200 4.13E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77021 PF00069 Pkinase 1.50E-68 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1090 - - - 0.0