Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1100 ATGATGGTGGGCATGGCCAGTTGGGTTTGTTTGTTTTATTTCTTCTTGTTGGTGCTTCTTAGTTTCGTTCATGGGGATATTGGTGGTGGTGGCTGGTTTGATGCTCATGCAACTTTCTATGGAGCTGATCAAAACCCTAATACTCTTGGAGGAGCGTGTGGTTACGACAACACATTCCACGCCGGATTCGGAGTAAACACGGCGGCGCTGAGCGGCGCACTTTTCAGAGCAGGAGAGGCGTGCGGCGCTTGCTTCCTAGTAATCTGCAACTATAAGCTCGACCCCAAGTGGTGCCTCCGCCGCCGCGCCGTCGCCGTCACCGCCACTAACTTCTGCCCCTCCAATAACAACGGCGGCGCGTGCGACCCCCCTCGCTCCCATTTCGATATGTCGTCCCCGGCCTTCCTTAACATTGCTCGTCAAGGCAACGAAGGCATCGTACCCGTCCTTTACAAGAGGGTGAGTTGCAGGAGAAAGGGAGGGGTTCGATTCACATTGAGAGGGCAATCGAACTTCAACATGGTGATGATATCGAATATTGGTGGGAGTGGGGAGCTAAAGAGTGCATGGATAAAGGGGTCGGGGTGGAGGACATGGACGCCCATGCACCGCAACTGGGGAGCGAACTGGCAAGCCAACGTCGACCTTCGAAACCAGAGAATGTCGTTTAAGCTCACTCTGGTTGATGGAAAAACAATGGAGTTTGTCAATGTGGTTCCTTCCTCTTGGAGATTTGGGCAGACATTTTCTTCCATGTTTCAGTTCCCTTAA 771 52.53 MMVGMASWVCLFYFFLLVLLSFVHGDIGGGGWFDAHATFYGADQNPNTLGGACGYDNTFHAGFGVNTAALSGALFRAGEACGACFLVICNYKLDPKWCLRRRAVAVTATNFCPSNNNGGACDPPRSHFDMSSPAFLNIARQGNEGIVPVLYKRVSCRRKGGVRFTLRGQSNFNMVMISNIGGSGELKSAWIKGSGWRTWTPMHRNWGANWQANVDLRNQRMSFKLTLVDGKTMEFVNVVPSSWRFGQTFSSMFQFP 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8120331 8123767 + MC10g0938 Mch10g1100 678193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1100 256 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576(InterPro)
Mch10g1100 256 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Mch10g1100 256 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576(InterPro)
Mch10g1100 256 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Mch10g1100 256 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Mch10g1100 256 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576(InterPro)
Mch10g1100 256 Gene3D - 24 157 IPR036908 -
Mch10g1100 256 CDD DPBB_EXPA_N 31 156 - -
Mch10g1100 256 Gene3D - 161 255 IPR036749 -
Mch10g1100 256 Pfam Lytic transglycolase 67 151 IPR009009 -
Mch10g1100 256 SUPERFAMILY Barwin-like endoglucanases 13 179 IPR036908 -
Mch10g1100 256 PANTHER EXPANSIN-A15 9 250 IPR002963 GO:0009664(InterPro)
Mch10g1100 256 Pfam Expansin C-terminal domain 162 240 IPR007117 -
Mch10g1100 256 SUPERFAMILY PHL pollen allergen 158 251 IPR036749 -
Mch10g1100 256 SMART dpbb_1 67 151 IPR007112 -
Mch10g1100 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 251 IPR007117 -
Mch10g1100 256 PRINTS Expansin signature 91 102 IPR002963 GO:0009664(InterPro)
Mch10g1100 256 PRINTS Expansin signature 160 172 IPR002963 GO:0009664(InterPro)
Mch10g1100 256 PRINTS Expansin signature 237 253 IPR002963 GO:0009664(InterPro)
Mch10g1100 256 PRINTS Expansin signature 118 135 IPR002963 GO:0009664(InterPro)
Mch10g1100 256 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
Mch10g1100 256 PRINTS Expansin signature 172 193 IPR002963 GO:0009664(InterPro)
Mch10g1100 256 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Mch10g1100 256 PRINTS Expansin signature 208 229 IPR002963 GO:0009664(InterPro)
Mch10g1100 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 161 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1100 Mch-Chr10:8120331 Mch9g2116 Mch-Chr9:22063783 4.03E-84 dispersed
Mch10g1100 Mch-Chr10:8120331 Mch6g0242 Mch-Chr6:1592357 2.58E-86 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1100 - - - 0.0