Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1131 ATGGCCGCCACCGCCACCTCCACCGCCCTTCTCCGGCCGACCCCTTTTCTCGGCCAGGCCAGAGGGTCGCCGCAGAACCCCCTCAGAGATGTCGTCGCCATGGGGACTGCCAAATACACCATGGGAAATGATCTGTGGTATGGGCCGGACAGAGTGAAGTACTTGGGGCCGTTTTCAGCCCAGACTCCGTCGTACTTGAACGGAGAGTTCCCAGGCGACTATGGATGGGACACTGCTGGGTTGTCCGCTGATCCAGAGGCCTTCGCCAAGAACAGAGCTCTTGAGGTGATCCATGGGAGGTGGGCAATGTTGGGAGCTCTAGGGTGCATTACGCCGGAAGTGCTGGGAAAATGGTTGAGAGTGGAGTTTAAAGAGCCAGTGTGGTTTAAGGCTGGTGCCCAAATCTTCTCGGAGGGTGGGCTGGACTACTTGGGCAACCCAAACCTGGTCCACGCCCAGAGCATCCTGGCCGTGCTAGGCTTCCAAGTGGTGCTAATGGGGCTCGTGGAGGGCTTCCGCATCAACGGCCTCGATGGTGTCGGTGAAGGCAACGACCTCTACCCCGGCGGGCAGTACTTCGACCCCCTCGGCCTGGCCGATGACCCCACCACATTCGCTGAGCTTAAGGTCAAGGAGATCAAGAACGGGCGGCTCGCCATGTTCTCCATGTTCGGGTTCTTTGTTCAGGCCATTGTCACTGGAAAGGGCCCACTTGAGAACCTTCTCGACCATTTGGATAACCCAGTGGCTAACAATGCTTGGGTTTATGCCACCAAATTTGCGCCAGGTTCATAG 795 57.99 MAATATSTALLRPTPFLGQARGSPQNPLRDVVAMGTAKYTMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLGKWLRVEFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGS 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8486767 8488847 - MC10g0965 Mch10g1131 678224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1131 264 FunFam Chlorophyll a-b binding protein, chloroplastic 53 257 - -
Mch10g1131 264 SUPERFAMILY Chlorophyll a-b binding protein 45 261 - -
Mch10g1131 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 30 263 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Mch10g1131 264 Gene3D Chlorophyll a/b binding protein domain 53 257 - -
Mch10g1131 264 Pfam Chlorophyll A-B binding protein 63 231 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1131 Mch-Chr10:8486767 Mch4g0334 Mch-Chr4:2087671 2.14E-128 dispersed
Mch10g1131 Mch-Chr10:8486767 Mch2g0724 Mch-Chr2:4940071 3.22E-121 transposed
Mch10g1131 Mch-Chr10:8486767 Mch3g1003 Mch-Chr3:13775686 3.46E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1131 K08914 - csv:101207278 519.62