Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1135 ATGGCCACCTCATCAGATCACGACGACCGCCACCGCGCCACCGACGACAGCGAGTCAGAAGAAGAAGAAGAAGAAGAAGAACACAACTCCGGCGGCGGGGGCGGTGGCGGTGGCGTTGGGGCGGCGGTGGGTCCTGGAGCGAAATGGGTGCGAGAATGGAACCGGGTGTTCCTGGTGGTGTGCGCGGCGGGGCTGTTCGTGGACCCACTGTTTCTGTACACGCTCTCCATAAGCGAGGCGTGGACGTGCGTGTTCGTCGACGGCTGGCTCGCCGTCACCGTCACCGTCCTCCGCTGCATGGCCGACGCCTTCCACCTCTGCAACATCTGGCTCCGTTTCAACACCACCGCCGCCGCCGCCACCTCCACCTCTTTCTTCGGCACCCGCCACGCCGTCGCTATGCGCTATTTCAACTCCAACAAAGGCTTCTTCTTTGATCTCTTTGTTATTCTTCCTCTTCCTCAGGTTTTATTATGGGTTGTAATTCCTTCAATAATGAAACAAGGCTCAGTGACAATGGTGATGACAGTGTTGTTAATAGTATTTTTGTTCCAATATTTGCCGAAAGTTTACCACTCCCTTTGCCTCTTGCGCCGCCTCCAAAACCTCTCCGGCTACATCTTCGGCACTGTCTGGTGGGGCATTGCTCTCAATCTCATTGCTTACTTCGTTGCTGCCCACGGTGCAGGAGCATGCTGGTACCTGCTGGGAATTCAGAGAGCAGCAAAGTGCCTAAAAGAGCAATGCAGAGGGAGCAGCAGCTGCGGGGCGAGGGTGCTGTCGTGCAAACAGCCAATATTCTATGGAGCAACCAACATGGGAAGAGACAGAGCAAGATTTGAATGGGCAGAAAACAGGCAGCCAAAATTGATGTGCTTGGAAACTGCAGAGAATTTTGATTATGGAGCTTATAAATGGACTGTTCAGCTTGTTGTCAACCAGAGTCGGTTGGAGAAGATTCTGTTCCCCATATTTTGGGGCCTCATGACTCTTAGTACCTTTGGGAACTTGGAGAGCACCACAGAATGGGTGGAAGTTGTGTTCAACATCATTGTACTCACCAGTGGACTCCTTTTGGTCACCATGTTGATTGGAAATATCAAGGTGTTTCTGCATGCAACTACGTCAAAGAAACAAGCCATGCAGCTGAAGATGAGGAACTTGGAGTGGTGGATGAGGAAGAGGCGGCTGCCACAAGGGTTCCGGCAGCGGGTTCGGAACTACGAGAGGCAGCGGTGGGCGGCGATGCGCGGGGTTGACGAGTGCGAGATGATCAGAAATCTACCGGAAGGCCTCCGGCGAGACATCAAGTATCACCTTTGCTTGGATCTGGTTAGGCAGGTTCCTTTGTTTCAACATATGGATGATCTTGTTCTTGAGAACATTTGTGATCGTGTCAAGTCCCTCATCTTCACCAAGGGCGAAACCATAACGAGGGAGGGAGACCCAGTACAGAGAATGTTGTTTGTGGTACGGGGCCACCTCCAAAGCAGTCAAGTCCTACGCGACGGCGTGAAAAGCTGCTGCATGTTAGGGCCCGGCAACTTCAGCGGCGACGAGCTTCTGTCATGGTGCCTCCGCCGCCCGTTCATCGAGCGCCTCCCCCCATCATCTTCCACTCTCGTGACTCTCGAGACAACGGAGGCCTTCGGTCTGGAGGCCGAGGACGTGAAGTATGTCACGCAGCACTTCCGCTACACCTTCGTGAACGACAAGGTGAAGCGCAGCGCACGGTACTACTCCCCCGGGTGGCGGACTTGGGCTGCGGTGGCCATCCAGCTTGCCTGGCGGCGGTACCGGCACCGGCTTACGCTTAGCTCGCTGTCTTTTATTCGGCCGCGCCGCCCCCTCTCGCGGTGCTCTTCATTGGGCGAGGATCGCCTCCGCCTCTACACGGCGCTGCTTACTTCTCCCAAGCCCAATCACGACCACTTTGATTTCTGA 1944 55.04 MATSSDHDDRHRATDDSESEEEEEEEEHNSGGGGGGGGVGAAVGPGAKWVREWNRVFLVVCAAGLFVDPLFLYTLSISEAWTCVFVDGWLAVTVTVLRCMADAFHLCNIWLRFNTTAAAATSTSFFGTRHAVAMRYFNSNKGFFFDLFVILPLPQVLLWVVIPSIMKQGSVTMVMTVLLIVFLFQYLPKVYHSLCLLRRLQNLSGYIFGTVWWGIALNLIAYFVAAHGAGACWYLLGIQRAAKCLKEQCRGSSSCGARVLSCKQPIFYGATNMGRDRARFEWAENRQPKLMCLETAENFDYGAYKWTVQLVVNQSRLEKILFPIFWGLMTLSTFGNLESTTEWVEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNLEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMIRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVNDKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLSSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNHDHFDF 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8508111 8514413 + MC10g0968 Mch10g1135 678228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1135 647 Gene3D Helix hairpin bin 375 441 - -
Mch10g1135 647 Gene3D Jelly Rolls 448 566 IPR014710 -
Mch10g1135 647 FunFam Cyclic nucleotide-gated ion channel 1 377 441 - -
Mch10g1135 647 MobiDBLite consensus disorder prediction 1 17 - -
Mch10g1135 647 SUPERFAMILY Voltage-gated potassium channels 49 371 - -
Mch10g1135 647 MobiDBLite consensus disorder prediction 1 38 - -
Mch10g1135 647 SUPERFAMILY cAMP-binding domain-like 376 564 IPR018490 -
Mch10g1135 647 ProSiteProfiles cAMP/cGMP binding motif profile. 450 560 IPR000595 -
Mch10g1135 647 CDD CAP_ED 450 556 IPR000595 -
Mch10g1135 647 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 43 604 - -
Mch10g1135 647 Pfam Cyclic nucleotide-binding domain 471 560 IPR000595 -
Mch10g1135 647 FunFam cyclic nucleotide-gated ion channel 4 448 566 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1135 Mch-Chr10:8508111 Mch4g2352 Mch-Chr4:24784532 1.01E-218 dispersed
Mch10g1135 Mch-Chr10:8508111 Mch2g0345 Mch-Chr2:2559871 4.73E-126 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1135 K05391 - csv:101207531 1085.09