Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1143 ATGCCAACGGTTTGGTTGTCTTTGAAGAAATCTTTGCATTGCAAATCAGAGCCATCGGAAGTTCATGACCCAAAAAGCAGGAAGAATTTGGGAGCAATTTTGACAAGAAAAACAGGGGGAGGAGGAAGATCAGGGTGTTCGAGGTCCATAGCGAATCTCAAAGATGTCATCCATGGCGGAAGCAGGAGGCATTTGGAGAAACCCCCAAGTTGCAGCCCAAGATCCATTGGGAGTAGTGAGTTTCTTAACCCAATAACCCACGAAGTCATTCTCAGTAACTCTAGGTGCGAGCTCAAAATCACCGGCTTTCATGGCGGTTTACAAGATGTGGCTGCCGGCACCGCCGCCGCCGATGGTCATGGTGGCGCTAACGGCGGTTCCACCTTTGTGGGTACTCTGACACCGGGTACCCCCGGCCCCGGTGGCCACCCCACTATGCATTACTTTAGGACTCCTTCCAGAAAGTTCCCCTTTAGAGAGGGTTTTGGAAGCTCTAATAAATCCGGCAGCGGCGGCGGCGGCGGCGGGGGTGGCGGTGGTGGAGTTAATTCGAGCAATAGAATCTCTTTGGAGACGGAGATTGGTGGGAATGGGTCTTCTTCTGTGGTTACTTGCCATAAATGTGGAGAGCAGTTCAACAAATGGGAGGCTGCTGAAGCTCATCATCTCTCTAAACATGCTGTGACTGAGCTTGTGGAAGGAGATTCATCAAGGAAAATTGTGGAGATCATATGCAGAACAAGCTGGTTAAAGTCCGAGAATCAAACTGGTAGAATAGAAAGAGTGCTGAAAGTCCACAACATGCAGCGAACGCTAGCCCGGTTCGAGGAGTATCGCGAGACGGTTAAAACCAAAGCCAGCAAGCTCCCGAAGAAGCACCCTCGGTGCCTCGCCGACGGGAATGAGCTCCTGCGATTCTACGGCACCACGGTCGCATGCTCGCTCGGCCTGAATGGCTCCTCCAGCCTCTGCATATCGGAGAAATGCTGCGTCTGCAGGATCATACGAAACGGGTTCTCGGCAAAGACCGAGATGAAGGAAGGGATTGGAGTTTTCACAACTTCGACGAGCGCAAGAGCATTCAGCTCGATCGAGGCATCGGGAGGGGACGAGGTGGTGGCGAGGAAGGCGATGATAGTATGCAGGGTGATTGCTGGGAGAGTTCACAGGCCATTGGAGAACATACAAGAAATGGCTGGGCAGACAGGGTTTGATTCATTGGCAGGGAAAGTTGGGCTGCATTCTAATATAGAAGAACTTTATTTGCTGAATCCTAGAGCTTTGCTTCCATGTTTTGTGGTAATTTGCAAACCATGA 1317 51.18 MPTVWLSLKKSLHCKSEPSEVHDPKSRKNLGAILTRKTGGGGRSGCSRSIANLKDVIHGGSRRHLEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFHGGLQDVAAGTAAADGHGGANGGSTFVGTLTPGTPGPGGHPTMHYFRTPSRKFPFREGFGSSNKSGSGGGGGGGGGGGVNSSNRISLETEIGGNGSSSVVTCHKCGEQFNKWEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENQTGRIERVLKVHNMQRTLARFEEYRETVKTKASKLPKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCISEKCCVCRIIRNGFSAKTEMKEGIGVFTTSTSARAFSSIEASGGDEVVARKAMIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKP 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8567434 8569627 + MC10g0975 Mch10g1143 678236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1143 438 MobiDBLite consensus disorder prediction 182 198 - -
Mch10g1143 438 MobiDBLite consensus disorder prediction 159 198 - -
Mch10g1143 438 ProSitePatterns Zinc finger C2H2 type domain signature. 205 226 IPR013087 -
Mch10g1143 438 FunFam C2H2-like zinc finger protein 227 437 - -
Mch10g1143 438 SUPERFAMILY ADP-ribosylation 228 437 - -
Mch10g1143 438 Gene3D - 228 437 - -
Mch10g1143 438 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 437 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1143 Mch-Chr10:8567434 Mch1g1800 Mch-Chr1:18223991 4.30E-65 dispersed
Mch11g0123 Mch-Chr11:781635 Mch10g1143 Mch-Chr10:8567434 1.25E-62 transposed
Mch2g0853 Mch-Chr2:5831169 Mch10g1143 Mch-Chr10:8567434 1.89E-55 transposed
Mch4g1743 Mch-Chr4:20524939 Mch10g1143 Mch-Chr10:8567434 1.13E-73 transposed
Mch6g1767 Mch-Chr6:20196069 Mch10g1143 Mch-Chr10:8567434 8.94E-29 transposed
Mch10g1143 Mch-Chr10:8567434 Mch11g1146 Mch-Chr11:8049517 8.28E-194 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42498 None None None None Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1143 - - - 0.0