Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1151 ATGTCTCCTCAAGTTTCTGCTTCTAACATGAAGGCTCCACACGTTTCTAATACCAAACATCGACCCATTGCTTCTTTTCATCCCAGTATTTGGAAGGATCATTTTCTTGCACCAATTTATGAAGCACTGGAAGTAGAGGATGAAGTGAAAGAAGAAAGGGAGCAGTTGAAAGAGGAAGTGAGGAAGATGCTAATTGTCGTCGTGGAAAATCCTTTTGATAAGCTTAAGTTGGTTGATTGGATACAAAAATTAGGGGTATTTTACCACTTTGAAAAGGAGATCAATCAAGTCTTGGAACACATGTATGTGACGTATAAAAACTTCTTGAATGACTTTGGCGATGAAGATCTTAATACCGTTTCTCTTTTATTTCGAATGCTTAGACAACAAGGTTACAGAATTTCATGTGATATATTCTCAAAGTTTATGAAAAATGATGGACAATTTAAAGAATCATTGAGGGGTGATACAAGAGGAATATTAAGCCTGTATGAAGCAGCACACCTGAGGATACACGGAGAAGATATTCTTGAGAAAGCACTTGATTTTACAACTAATCATCTCAAAAAACTGGTTGCTGATTCAACCTCTCCATTTACCACTGAAATTAAGAATGCCTTAAAGTGGCCTATAAGAAAGGCTCTCCCAAGAGTAAAGGCAAGAGATTACATGGTAATCTATCAACAAGATCCTTCACATAATGATGCATTGCTTACTTTCTCAAAATTAGATTTCAACATATTACAAAAACTTCACCAAAGCGAGTTGAATGCAATCACAAGGTGGTGGAAGGATTTGGACCTTCCAAGAACTTTACCTTTTGCTAGAGATAGAATTGTGGAGTGCTACTTCTGGATATTGGGTGTATATTTCGAACCCCATTTCAGCATTGCAAGGAAAATATTGACCAAAGTGACCGCTATGACGTCAATTTTAGACGATATGTATGATGCTTATGGAACATATGAAGAACTCGAAATCCTCACTTTAGCCATCAAAAGATGGGATATAAGCATGGTCAATCTACTCCCTGAGTACATGAAAGTTTATTATAAGACTCTCTTAGAACTCTATGAAGAAATTGGCAGAGATATAGGCAAGGATGGAAAGTCATATCAGATTCACTTTGCAAAAGAAGCAATGAAAAGACTAGCTGAATCCTACTTTAAAGAAGCTGAGTGGTTAAGCAAAAGGTATAGACCAAATTTTGATGAGTATATGGAAGTGGCATTGGATAGTTCAGGCTATGCAGTACTCGCAACCATTTCATTCGTTGGCATGGGTGATATTGCAACAAGGGAGGTATTTGATTGGCTCTCAAAACACCCTAAAATTATTGAAGCCTCAACAATGATTTCTAGACTCATGGACGATGTTATGTCTTACAAGTTTGAGCAACAGAGGGAACATGTTGTTTCTGCTGTAGAATGTTATATGGAGCAATATGGCTGTTCAGAAGAAGAGGCATGTGTTGAATTTAATAAGCAAGTCGCAGAAGCATGGAAGGACATAAATGAAGCTTGCCTTCATCCAACGACTGTTCCAATGATTTTTCTAATGCGTGTATTAAATCTTTCTCGAGTTATGGCGCTACTTTATGTAGACGAGGATGGATATACAAATTCTAAGGGTAGAACAAAATTTCTTATCGAGTCTCTACTTGTTGACCCAGTATCCTTGTGA 1683 37.31 MSPQVSASNMKAPHVSNTKHRPIASFHPSIWKDHFLAPIYEALEVEDEVKEEREQLKEEVRKMLIVVVENPFDKLKLVDWIQKLGVFYHFEKEINQVLEHMYVTYKNFLNDFGDEDLNTVSLLFRMLRQQGYRISCDIFSKFMKNDGQFKESLRGDTRGILSLYEAAHLRIHGEDILEKALDFTTNHLKKLVADSTSPFTTEIKNALKWPIRKALPRVKARDYMVIYQQDPSHNDALLTFSKLDFNILQKLHQSELNAITRWWKDLDLPRTLPFARDRIVECYFWILGVYFEPHFSIARKILTKVTAMTSILDDMYDAYGTYEELEILTLAIKRWDISMVNLLPEYMKVYYKTLLELYEEIGRDIGKDGKSYQIHFAKEAMKRLAESYFKEAEWLSKRYRPNFDEYMEVALDSSGYAVLATISFVGMGDIATREVFDWLSKHPKIIEASTMISRLMDDVMSYKFEQQREHVVSAVECYMEQYGCSEEEACVEFNKQVAEAWKDINEACLHPTTVPMIFLMRVLNLSRVMALLYVDEDGYTNSKGRTKFLIESLLVDPVSL 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8661778 8665661 - MC10g0980 Mch10g1151 678244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1151 560 FunFam Isoprene synthase, chloroplastic 200 548 - -
Mch10g1151 560 PANTHER OS04G0344100 PROTEIN-RELATED 27 539 - -
Mch10g1151 560 CDD Terpene_cyclase_plant_C1 21 557 IPR044814 GO:0010333(InterPro)|GO:0016102(InterPro)
Mch10g1151 560 Gene3D - 69 233 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Mch10g1151 560 FunFam Isoprene synthase, chloroplastic 69 233 - -
Mch10g1151 560 Pfam Terpene synthase, N-terminal domain 30 207 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
Mch10g1151 560 Gene3D Farnesyl Diphosphate Synthase 28 547 IPR008949 -
Mch10g1151 560 SFLD Isoprenoid Synthase Type I 233 559 - -
Mch10g1151 560 Pfam Terpene synthase family, metal binding domain 264 503 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Mch10g1151 560 Coils Coil 39 66 - -
Mch10g1151 560 SUPERFAMILY Terpenoid synthases 233 558 IPR008949 -
Mch10g1151 560 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 27 233 IPR008930 -
Mch10g1151 560 SFLD Terpene Cyclase Like 1 C Terminal Domain 233 559 IPR034741 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1151 K15803 - - csv:101211697 735.717
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1151 Mch-Chr10:8661778 Mch10g1554 Mch-Chr10:15619505 1.02E-186 dispersed
Mch10g1151 Mch-Chr10:8661778 Mch10g1155 Mch-Chr10:8729090 1.35E-163 proximal
Mch2g1467 Mch-Chr2:10975625 Mch10g1151 Mch-Chr10:8661778 6.29E-92 transposed
Mch2g1867 Mch-Chr2:18545257 Mch10g1151 Mch-Chr10:8661778 1.57E-93 transposed
Mch2g1896 Mch-Chr2:19092614 Mch10g1151 Mch-Chr10:8661778 2.25E-109 transposed
Mch7g0301 Mch-Chr7:4143097 Mch10g1151 Mch-Chr10:8661778 1.55E-174 transposed
Mch10g1151 Mch-Chr10:8661778 Mch3g1189 Mch-Chr3:15115469 3.61E-38 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g399 Blo03g00605 . . . . . . . . . . . . . . . . . . . . . . . Cla10g00587 Cam10g0572 Cec10g0605 Cco10g0581 Clacu10g0606 Cmu10g1418 Cre10g0819 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi11g00693 Tan01g1634 . . Hepe07g0540 Mch10g1151 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337