Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1173 ATGGCGGAGGAGTTTCCGAGCAGTGGAAACTGGTGGGACGCTTCTAGAAGCCGCTACGACGCCGGAATATCCCCCTCCTCCTCCTCCGTCACCACCTTCCCCTGGCCGCCGCCCGACATCGCCGACGTCAAGCCCAGATCCTCCATCCACGACTCCGACTCCGACTCCGCCTCCGCCGATCCCAATTTGCATTTCATGGGCTTGGGCCTCGCCTCTCCGCCCATCGATTGGAACCACCCCTTGCTTCGCGGCGGAGAGAAGGCGGCAGAGAGTAGTTTCCGGTCGATGCTGCAGCAGGAGAATATGCAAGAAACCGGACAGCAGCAGCAGCAGATTCAATGGATGAGATCGGAGAAGCTGTTTTCCGGCGAGACTCCGGCGAGCGAATTCAAGGCAATAAACCGGGGGTTTTCGCTGGACCATCATCAGGCGCAGCCGCAGCAGTTCAGTCCTCCTCAGTACAGCTCCGGCGACAGCGCCGTCACGAGTTTCCCAATGGACACGGCGGCGAATTTATACGGAAGCTCGGCAACATTATTACAAGGCTTATTAGGAGGTGGCGACCAGCAACAAACTTCGCCGCCGGCGCCCGCCTTGAATTTCCCTTACAGTGCCCATTTCGCGATGAACTCCGGCGAGTTAATGCCGCCGTGGTCCGCCTCTAAAGTCCCCCCGTTTCTGAGAAACTCCCCGCCGAAAGCGGCTGCTCCGGCGCCGCCACACAGCAGCCACTTACACTTCTCCAACAACACGCCCTTCTGGAACGCCTCCGACATCAAAGACGTGAGACCCAGCTTTTTCCCCTCCTACAACCCCGCTCCCGCGTATCCGGATAAATCGAAGAATATATCGGAGGTTCGTGATTCGGGAACAGTAGGGAAAAAAAGTGGGAATGATCACAATCAACAAACGGGCGCAGCTGCTAAAAGGCCCCGAAATGAAACTCCGTCGCCGTTGCCAGCTTTTAAAGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCGCTCCAACAACTCGTTTCACCTTTCGGAAAGACTGATACAGCTTCAGTGCTGTCTGAAGCAATTGAATACATAAAGTTCCTCCATGAACAAGTCAGTGTTTTGAGCACTCCGTATTTGAAGAGTGGAACTGCAGTACAGCAACAACATCAGCAGCAGCAGAGCAGCGAGAAATCAAAGGAAGGAGAAGGAGGAAAGCAAGATCTAAGAAGCCGAGGGCTGTGCTTAGTTCCAGTTTCAAGTACATTTCCAGTCACTCATGAAACCACCGTTGATTTTTGGACTCCAACCTTCGGAGGAACCTTCAGA 1311 54.61 MAEEFPSSGNWWDASRSRYDAGISPSSSSVTTFPWPPPDIADVKPRSSIHDSDSDSASADPNLHFMGLGLASPPIDWNHPLLRGGEKAAESSFRSMLQQENMQETGQQQQQIQWMRSEKLFSGETPASEFKAINRGFSLDHHQAQPQQFSPPQYSSGDSAVTSFPMDTAANLYGSSATLLQGLLGGGDQQQTSPPAPALNFPYSAHFAMNSGELMPPWSASKVPPFLRNSPPKAAAPAPPHSSHLHFSNNTPFWNASDIKDVRPSFFPSYNPAPAYPDKSKNISEVRDSGTVGKKSGNDHNQQTGAAAKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYLKSGTAVQQQHQQQQSSEKSKEGEGGKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9032970 9036014 + MC10g0990 Mch10g1173 678266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1173 437 Gene3D - 323 395 IPR036638 GO:0046983(InterPro)
Mch10g1173 437 MobiDBLite consensus disorder prediction 379 405 - -
Mch10g1173 437 MobiDBLite consensus disorder prediction 10 34 - -
Mch10g1173 437 CDD bHLH_AtbHLH_like 319 370 IPR045239 -
Mch10g1173 437 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 376 IPR036638 GO:0046983(InterPro)
Mch10g1173 437 MobiDBLite consensus disorder prediction 286 310 - -
Mch10g1173 437 FunFam Transcription factor bHLH123 family 323 387 - -
Mch10g1173 437 MobiDBLite consensus disorder prediction 1 60 - -
Mch10g1173 437 MobiDBLite consensus disorder prediction 273 320 - -
Mch10g1173 437 SMART finulus 324 368 IPR011598 GO:0046983(InterPro)
Mch10g1173 437 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 110 416 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Mch10g1173 437 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 362 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1173 Mch-Chr10:9032970 Mch1g1803 Mch-Chr1:18243588 1.06E-63 dispersed
Mch10g1173 Mch-Chr10:9032970 Mch6g0827 Mch-Chr6:5721616 1.66E-34 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1173 - - - 0.0