Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1237 ATGATCTCTTCTTTGAGTCAATCTGCAAAATCGATTAATGGGTCCGACGTTGTTCTCCGGCGGAGGTCTCCGGCGCCAATCCGGCGGTTTTCGTGTCCACCTCCATTGCCGGTGCAGAAACCCCAAGGCGCCGTAGTCTGTATGAAAAATGCTCTTCATGTCTCTTCGGTTTCGAACTTTGGGCCATTGGGAACTCGGAAGAGTGATTTGATTACGAGAAAAGCTTATGAGGCTGATCGGTCGGAGCCGATCGAGTCGAACATTGAACTGACGGTGGCCGAAGCGCCGTCGGAGGCGGCGGCGAAGAAGGTTAAGATCGGGCTGTACTTCGCTCTGTGGTGGGGTTTGAACGTGGTGTTCAACATTTACAACAAGAAGGTTTTGAATGCGTATCCATATCCATGGCTGACCTCCACACTTTCTCTCGCTGTTGGCTCTCTCATCATGTTATTCTCTTGGATGACCAGGATCGCCGAGGCACCCAAGACCGATTTTGAGTTCTGGAAGTCTCTGTTCCCGGTTGCTGTGGCCCATACGATTGGACATGTAGCGGCAACCGTGAGCATGTCAAAGGTCGCTGTCTCATTCACTCATATCATCAAGAGTGGTGAGCCTGCCTTTAGTGTACTGGTTTCAAGGTTCTTGTTGGGTGAAACTTTTCCACTTCCTGTCTATCTCTCTCTCGTCCCGATCATCGGTGGCTGTGCGCTCGCTGCTGTGACTGAGCTCAACTTCAACATGATTGGTTTCATGGGAGCCATGATATCAAACTTGGCATTCGTCTTCCGAAACATATTCTCGAAGAAAGGCATGAAGGGGAAGTCCGTTAGTGGAATGAACTACTACGCCTGTCTTTCGATATTGTCCCTTTTGATTCTTACTCCGTTCGCCATTGCTGTCGAAGGACCGCAAATATGGGCTGCTGGATGGAAAACAGCTCTCTCTCAGATTGGACCTAATTTCGTATGGTGGGTAGCAGCACAGAGTGTGTTCTATCATCTCTACAACCAAGTTTCTTACATGTCGTTGGATGAGATTTCTCCCTTGACGTTCAGCATTGGTAACACCATGAAGCGTATATCAGTGATAGTTTCTGCGATCATCATCTTCCGCACCCCGGTCCAGCCCGTCAACGCTCTCGGAGCCGCCATCGCCGTTTTTGGGACCTTCTTGTATTCACAGGCAAAACAATGA 1194 49.58 MISSLSQSAKSINGSDVVLRRRSPAPIRRFSCPPPLPVQKPQGAVVCMKNALHVSSVSNFGPLGTRKSDLITRKAYEADRSEPIESNIELTVAEAPSEAAAKKVKIGLYFALWWGLNVVFNIYNKKVLNAYPYPWLTSTLSLAVGSLIMLFSWMTRIAEAPKTDFEFWKSLFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGETFPLPVYLSLVPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSILSLLILTPFAIAVEGPQIWAAGWKTALSQIGPNFVWWVAAQSVFYHLYNQVSYMSLDEISPLTFSIGNTMKRISVIVSAIIIFRTPVQPVNALGAAIAVFGTFLYSQAKQ 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9967891 9971683 + MC10g1029 Mch10g1237 678330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1237 397 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 105 396 IPR004696 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Mch10g1237 397 PANTHER SOLUTE CARRIER FAMILY 35 99 396 IPR050186 GO:0005794(PANTHER)|GO:0015120(PANTHER)|GO:0015297(PANTHER)|GO:0071917(PANTHER)
Mch10g1237 397 Pfam Triose-phosphate Transporter family 105 393 IPR004853 -
Mch10g1237 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 147 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1237 K15283 - - csv:101216838 721.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1237 Mch-Chr10:9967891 Mch1g1770 Mch-Chr1:18083541 2.96E-192 dispersed
Mch10g1237 Mch-Chr10:9967891 Mch11g1168 Mch-Chr11:8215615 4.61E-233 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g471 Blo03g00576 Blo03g01442 Bda07g00346 Bda09g00389 . Bpe08g01134 . . Cmo16g00906 . Cma01g01142 Cma09g00938 . Car09g00851 Sed07g2664 Cpe06g00755 Cpe02g00758 Bhi09g01923 Tan01g4525 Cmetu04g1453 . Hepe01g1296 Mch11g1168 . Cla10g00522 Cam10g0516 Cec10g0534 Cco10g0522 Clacu10g0539 Cmu10g1364 Cre10g0767 . . . . Lsi04g01225 Csa03g00529 . Cme06g02272 . . . . Bpe11g00531 . Bma07g01308 Bma14g00350 . Cmo01g01194 Cmo09g00935 . Cma16g00853 . Car16g00851 . . Bhi11g00645 Tan01g1685 Cmetu06g1126 . . Mch10g1237 . Cla05g01512 Cam05g1627 Cec05g1631 Cco05g1659 Clacu05g1612 Cmu05g1512 . Lsi05g00616 . Chy06g01802 Cme04g00848
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1894 . 119 523 Antiporters AT5G46110 78.2 3.1e-171 598.2
Mch9g2077 . 32 407 Antiporters AT5G46110 71.3 6.9e-147 517.3
Mch11g1168 . 4 397 Antiporters AT5G54800 74.4 8.7e-160 560.1
Mch10g1237 . 1 396 Antiporters AT5G54800 73.3 2.0e-156 548.9
Mch1g1770 . 30 389 Antiporters AT5G54800 74.4 4.1e-149 524.6
Mch5g0285 . 60 374 Antiporters AT5G54800 53.0 2.0e-87 319.7
Mch3g1442 . 53 417 Antiporters AT3G01550 59.2 1.3e-112 403.3
Mch4g2209 . 1 301 Antiporters AT3G01550 66.6 5.1e-112 401.4
Mch3g1442 . 1 420 Antiporters AT5G33320 73.0 2.8e-156 548.5
Mch4g2209 . 1 301 Antiporters AT5G33320 60.6 6.9e-99 357.8
Mch11g1168 . 20 397 Antiporters AT1G61800 75.5 1.2e-159 559.7
Mch10g1237 . 45 397 Antiporters AT1G61800 79.9 4.6e-159 557.8
Mch1g1770 . 32 385 Antiporters AT1G61800 78.3 1.3e-158 556.2
Mch5g0285 . 80 378 Antiporters AT1G61800 52.8 2.6e-85 312.8
Mch5g0285 . 68 390 Antiporters AT5G17630 83.6 1.4e-150 529.6
Mch11g1168 . 85 397 Antiporters AT5G17630 54.1 1.0e-89 327.4
Mch10g1237 . 98 395 Antiporters AT5G17630 55.8 3.0e-89 325.9
Mch10g1417 . 7 400 Antiporters AT3G13320 77.4 1.2e-165 579.7
Mch2g0453 . 72 448 Antiporters AT3G13320 77.5 3.2e-158 555.1
Mch8g1017 . 58 424 Antiporters AT3G13320 75.0 5.3e-153 537.7
Mch1g0613 . 7 430 Antiporters AT2G38170 69.6 1.2e-158 556.6
Mch5g1936 . 9 428 Antiporters AT2G38170 62.6 3.6e-139 491.9
Mch10g1417 . 27 398 Antiporters AT2G38170 50.5 2.4e-90 329.7
Mch1g0613 . 8 398 Antiporters AT3G51860 71.5 2.4e-148 522.3
Mch5g1936 . 3 396 Antiporters AT3G51860 65.5 2.2e-133 472.6
Mch10g1417 . 27 367 Antiporters AT3G51860 52.5 3.2e-84 309.3
Mch2g0453 . 64 419 Antiporters AT3G51860 50.8 1.0e-82 304.3
Mch1g0613 . 36 426 Antiporters AT5G01490 62.6 9.6e-134 473.8
Mch5g1936 . 29 428 Antiporters AT5G01490 60.2 8.4e-130 460.7
Mch10g1417 . 7 396 Antiporters AT1G55720 74.7 3.7e-154 541.6
Mch2g0453 . 72 448 Antiporters AT1G55720 73.8 1.8e-148 522.7
Mch8g1017 . 58 427 Antiporters AT1G55720 70.9 1.8e-140 496.1
Mch10g1417 . 2 396 Antiporters AT1G55730 77.9 1.3e-167 586.3
Mch2g0453 . 73 448 Antiporters AT1G55730 78.7 1.1e-161 566.6
Mch8g1017 . 58 428 Antiporters AT1G55730 75.0 2.8e-154 542.0
Mch1g0613 . 67 430 Antiporters AT1G55730 51.1 2.5e-94 342.8
Mch6g1633 . 4 535 Antiporters AT5G27150 76.5 4.4e-234 807.4
Mch7g1138 . 22 529 Antiporters AT5G27150 74.8 1.1e-216 749.6
Mch9g0801 . 13 521 Antiporters AT5G27150 68.2 1.9e-197 685.6
Mch9g0802 . 1 539 Antiporters AT5G27150 65.5 4.4e-194 674.5
Mch9g0803 . 18 508 Antiporters AT5G27150 64.3 8.3e-177 617.1
Mch11g1230 . 12 535 Antiporters AT5G27150 58.4 2.3e-166 582.4
Mch6g1633 . 5 535 Antiporters AT3G06370 70.5 2.5e-208 721.8
Mch7g1138 . 22 540 Antiporters AT3G06370 71.2 3.2e-208 721.5
Mch9g0801 . 13 520 Antiporters AT3G06370 66.1 2.5e-184 642.1
Mch9g0802 . 22 541 Antiporters AT3G06370 63.9 2.4e-179 625.5
Mch9g0803 . 15 512 Antiporters AT3G06370 62.5 1.8e-171 599.4
Mch11g1230 . 12 517 Antiporters AT3G06370 58.5 2.8e-159 558.9
Mch11g1230 . 1 529 Antiporters AT5G55470 69.6 1.2e-212 736.1
Mch6g1633 . 18 520 Antiporters AT5G55470 59.0 9.1e-168 587.0
Mch7g1138 . 19 516 Antiporters AT5G55470 58.3 3.8e-166 581.6
Mch9g0801 . 2 509 Antiporters AT5G55470 55.4 1.1e-152 537.0
Mch9g0802 . 1 525 Antiporters AT5G55470 53.6 1.9e-149 526.2
Mch9g0803 . 9 508 Antiporters AT5G55470 53.6 7.5e-146 514.2
Mch6g1633 . 4 537 Antiporters AT3G05030 77.4 3.5e-239 824.3
Mch7g1138 . 22 529 Antiporters AT3G05030 74.9 2.5e-221 765.0
Mch9g0801 . 13 521 Antiporters AT3G05030 67.8 1.6e-199 692.6
Mch9g0802 . 25 542 Antiporters AT3G05030 67.0 1.3e-193 672.9
Mch9g0803 . 18 508 Antiporters AT3G05030 64.1 9.0e-179 623.6
Mch11g1230 . 12 517 Antiporters AT3G05030 59.5 2.3e-166 582.4
Mch8g1149 . 102 668 Antiporters AT1G15460 70.8 2.8e-231 798.1
Mch8g0425 . 99 686 Antiporters AT1G15460 65.3 2.7e-221 765.0
Mch6g2601 . 67 633 Antiporters AT1G15460 68.8 3.5e-221 764.6
Mch8g2109 . 102 645 Antiporters AT1G15460 59.6 1.9e-182 636.0
Mch3g1443 . 166 708 Antiporters AT1G15460 56.8 1.7e-175 612.8
Mch8g2109 . 3 708 Antiporters AT3G06450 70.2 6.6e-294 1006.5
Mch3g1443 . 67 729 Antiporters AT3G06450 71.7 2.7e-279 958.0
Mch8g1149 . 6 601 Antiporters AT3G06450 58.5 8.9e-214 740.3
Mch8g0425 . 3 665 Antiporters AT3G06450 53.8 2.0e-213 739.2
Mch6g2601 . 1 619 Antiporters AT3G06450 54.0 8.4e-196 680.6
Mch8g2109 . 1 715 Antiporters AT2G47160 80.3 0.0e+00 1165.2
Mch3g1443 . 65 745 Antiporters AT2G47160 74.4 1.3e-305 1045.4
Mch8g0425 . 4 665 Antiporters AT2G47160 56.5 4.5e-218 754.6
Mch8g1149 . 7 648 Antiporters AT2G47160 56.8 4.2e-216 748.0
Mch6g2601 . 1 619 Antiporters AT2G47160 56.6 7.8e-202 700.7
Mch8g1149 . 5 668 Antiporters AT1G74810 69.3 1.6e-273 938.7
Mch8g0425 . 4 685 Antiporters AT1G74810 65.8 9.0e-261 896.3
Mch6g2601 . 1 633 Antiporters AT1G74810 68.6 1.1e-253 872.8
Mch8g2109 . 7 645 Antiporters AT1G74810 59.4 4.2e-218 754.6
Mch3g1443 . 71 708 Antiporters AT1G74810 58.2 4.0e-216 748.0
Mch8g2109 . 1 707 Antiporters AT3G62270 82.5 0.0e+00 1169.1
Mch3g1443 . 65 756 Antiporters AT3G62270 76.1 4.1e-309 1057.0
Mch8g0425 . 4 665 Antiporters AT3G62270 57.9 2.2e-222 768.8
Mch8g1149 . 7 648 Antiporters AT3G62270 58.7 4.0e-219 758.1
Mch6g2601 . 1 619 Antiporters AT3G62270 58.4 8.0e-204 707.2
Mch8g0425 . 4 684 Antiporters AT4G32510 68.0 7.3e-271 929.9
Mch8g1149 . 1 665 Antiporters AT4G32510 65.0 6.0e-257 883.6
Mch6g2601 . 1 628 Antiporters AT4G32510 65.2 5.3e-237 817.4
Mch8g2109 . 1 646 Antiporters AT4G32510 55.2 7.9e-209 723.8
Mch3g1443 . 65 714 Antiporters AT4G32510 54.3 1.7e-206 716.1
Mch8g0425 . 4 682 Antiporters AT5G25430 69.3 1.3e-267 919.1
Mch8g1149 . 7 656 Antiporters AT5G25430 66.9 1.1e-250 862.8
Mch6g2601 . 1 627 Antiporters AT5G25430 64.6 1.4e-226 782.7
Mch8g2109 . 7 645 Antiporters AT5G25430 56.1 2.1e-206 715.7
Mch3g1443 . 71 720 Antiporters AT5G25430 54.4 3.6e-201 698.4
Mch4g1486 . 27 1140 Antiporters AT2G01980 66.5 0.0e+00 1382.9
Mch4g1486 . 11 738 Antiporters AT1G14660 65.4 1.9e-272 935.3
Mch8g0574 . 56 583 Antiporters AT5G11800 83.6 4.2e-238 820.8
Mch6g0906 . 147 687 Antiporters AT5G11800 80.3 2.2e-231 798.5
Mch10g0222 . 57 578 Antiporters AT5G11800 67.9 1.4e-185 646.4
Mch10g0222 . 18 576 Antiporters AT5G51710 80.3 2.6e-245 844.7
Mch6g0906 . 150 659 Antiporters AT5G51710 70.9 9.0e-190 660.2
Mch8g0574 . 49 556 Antiporters AT5G51710 69.3 2.1e-186 649.0
Mch6g0906 . 139 683 Antiporters AT2G19600 82.8 2.1e-237 818.5
Mch8g0574 . 42 583 Antiporters AT2G19600 81.8 7.4e-235 810.1
Mch10g0222 . 35 563 Antiporters AT2G19600 68.2 1.1e-182 636.7
Mch10g0480 . 148 563 Antiporters AT1G49810 77.0 3.5e-178 621.3
Mch10g0480 . 1 581 Antiporters AT3G19490 77.1 9.1e-246 846.3
Mch2g0139 . 79 566 Antiporters AT5G12860 89.0 7.6e-250 859.8
Mch10g0348 . 1 570 Antiporters AT5G64280 61.3 8.5e-193 670.2
Mch10g0348 . 1 570 Antiporters AT5G64290 69.4 1.3e-212 736.1
Mch4g0145 . 3 378 Antiporters AT4G28390 83.6 7.4e-180 626.7
Mch9g0549 . 3 389 Antiporters AT4G28390 75.0 5.5e-159 557.4
Mch9g0550 . 44 430 Antiporters AT4G28390 74.7 1.2e-158 556.2
Mch3g1675 . 24 325 Antiporters AT4G28390 64.1 6.9e-109 391.0
Mch9g0550 . 42 432 Antiporters AT3G08580 77.9 2.0e-169 592.0
Mch9g0549 . 1 390 Antiporters AT3G08580 77.6 7.7e-169 590.1
Mch4g0145 . 1 377 Antiporters AT3G08580 73.5 1.5e-151 532.7
Mch3g1675 . 8 325 Antiporters AT3G08580 56.7 2.7e-97 352.4
Mch9g0550 . 42 432 Antiporters AT5G13490 82.5 5.2e-181 630.6
Mch9g0549 . 1 390 Antiporters AT5G13490 81.9 4.4e-180 627.5
Mch4g0145 . 1 377 Antiporters AT5G13490 75.6 1.2e-161 566.2
Mch3g1675 . 8 325 Antiporters AT5G13490 60.8 1.0e-107 387.1
Mch3g1675 . 19 320 Antiporters AT5G17400 79.5 5.1e-139 490.7
Mch4g0145 . 78 367 Antiporters AT5G17400 63.8 3.2e-109 391.7
Mch9g0549 . 90 381 Antiporters AT5G17400 63.4 3.6e-108 388.3
Mch9g0550 . 131 422 Antiporters AT5G17400 63.4 3.6e-108 388.3
Mch6g2071 . 3 544 Antiporters AT1G08960 65.6 5.0e-185 644.4
Mch8g2180 . 32 559 Antiporters AT2G47600 69.9 4.7e-212 734.2
Mch9g0346 . 1 294 Antiporters AT1G79900 68.1 5.0e-115 411.0
Mch8g1173 . 10 312 Antiporters AT1G79900 66.8 1.6e-113 406.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000860 1 3 2 2 2 3 4 3 3 3 3 3 5 3 3 4 3 4 4 3 3 3 2 3 3 3 3 3 4 1 89