Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1261 ATGAAGCAGAAACTCAAATCCAAGAACTCTAGCAAGCAGAAGCGTTTATCTGAAGTTGAAGAAATCCAGCGCTTGAACTCATGGATTCAATCCCAGAAGCCCGACTCAGGCTCCAACCCTATGTCGCTCCCTCCGCTGCCCACAGATGCTCCCGTTGGCCGCATCAGTGCCGATTCTTACTCGCGTTACGCGGGAGCAACAAGGTTTGATCATTTGCCTATTTCGAAGAAGATGAAGGATGGGTTGCGTAAAGCTGAGTTCATTGATATGACCGATATTCAGAGGGCTTCGCTGCCTCACGCGCTTTGTGGCCGAGATATTCTTGGTGCAGCCAAAACTGGATCAGGAAAGACCTTGGCTTTTCTCATACCTGTTCTTGAAAAGTTGTATAGAGAGAGGTGGGGTCCCGAGGATGGAGTAGGGAGTATAATAATATCTCCCACAAGAGAATTAGGAGCTCAGCTGTTTGATGTATTGAAAGTTGTTGGGAAATATCATAATTTCAGTGCTGGCCTTTTGATTGGTGGTCGTAAAGATGTTAACACTGAGAAGGAGCATGTGAATGAGTTGAATATTCTTGTTTGCACTCCCGGTCGGCTTCTTCAGCACATGGATGAGACTCCAAATTTTGATTGTTCACAGCTTCAGGTTTTAGTCCTTGATGAAGCAGATCGAATTCTTGATGTTGGATTTAAGAGGACTTTAAATGCTATTATTTCGCAGCTACCCAAGCATAGACAAACCTTTCTGTTCTCAGCAACTCAAACAAAGTCTGTTCAGGATCTTGCCAGACTCAGTTTAAAAGATCCAGAGTACCTTAGTGTACACGAGGAATCTGTGACTGCTACCCCTAATCGTTTACAGCAAACTGCTATGGTTGTTCCTCTTGAGCAAAAGCTCGACATGCTATGGAGCTTCACAAAGGCGCATCTTAAATCTAAGATTCTTGTGTTTCTCTCTAGTTGTAAGCAGGTGAAATTTGTTTTTGAAACTTTCAAAAAGTTGCGTCCGGGAATCCCATTGAAGTGCCTCCATGGAAGGATGAAGCAGGACAAAAGGATGGGTATATATTCTGAGTTCTGTCAACGTGAGGAGGGCTCAGTCCTCTTCTCAACAGATGTAGCCTCTAGAGGCCTTGATTTTAACAAGGCAGTTGACTGGGTTGTACAGGTTGATTGCCCAGAAGATGTGGCTTCTTACATACATAGAGTTGGTCGCACTGCCCGCTACCATTCAGGTGGGAGATCAGTTTTATTTCTTATGCCCTCGGAGATGAAAATGCTTGAACAATTACAATCAGCTAAAGTACCTATTCAGCTTATCAAGGCAAACACAAAAAGACTTCAACCGGTTTCTGGTTTGCTGGCAGCCTTGTTAGTCAAGTATCCCAATTTTCAGCAACTTGCTCAAAGGGCCTTTATCACATATCTACGGTCAATTCATATCCAGAAGAATAAGGAAGTATTTGATGTTATGAAACTGTCAATTGACGAATTTTCAGCTTCATTGGGGTTACCAATGACCCCAAAAATCCGTTTCATCGATCAGAAAAGGAGGAAGTCAGAGAAGGTGTCTGCTAACTCTACTTTTCTTGTGTTGGAATCGTCTGATAAGGAGAATGCTTTCAAGACATCAGATGGAGAATTGGAGTATGGTGACTTTAAAGAAAGCGACCAAGGACTCCTTCCCCCAGCTCCTATTGATGCCGATGCCCCTTCTAGTGAAGTCGAAGATGCAGTGCCACGTACTCGGATTTTGAAGAAAAAGAAGCTAAAGATCAATGTCCACAGGCCAGTAGGGACGAGGGTTAGTTTTGACGATGAGGGCAACCCACTTGCCCCTCTTGCTAGGCTAGCTGACATCAAAACTAGCATTGAGTCATTTATAGTCGATAACGATAAAAAAGACGAGTTTTACAAAAAGAGGAGGGAAGAGTTAAAGGAAGCTGACAAGGAAGACAAACTTCTGGAGCGTAATCGTCTTAGAGAGAAGCGGGACAAGGAGAAGAAGAAGAAATTGAAGAGGGCTCGCAAAGAAAGTCAGGACGACGACGACATTTCTGGGGATGAAGAAGACAGGCCTCAGAAAAGGTCAAAGAAATATTATTCCGACAGTGATGGCGAGGTTGACAATAAAGTGGAAAACAACTTCAATACAGAGTCAAGCTCAGTGGCAGAACTAGAAGAGTTAGCTCTCAAATTGTTGAGTTCTCAGCGCTCATGA 2223 43.68 MKQKLKSKNSSKQKRLSEVEEIQRLNSWIQSQKPDSGSNPMSLPPLPTDAPVGRISADSYSRYAGATRFDHLPISKKMKDGLRKAEFIDMTDIQRASLPHALCGRDILGAAKTGSGKTLAFLIPVLEKLYRERWGPEDGVGSIIISPTRELGAQLFDVLKVVGKYHNFSAGLLIGGRKDVNTEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKRTLNAIISQLPKHRQTFLFSATQTKSVQDLARLSLKDPEYLSVHEESVTATPNRLQQTAMVVPLEQKLDMLWSFTKAHLKSKILVFLSSCKQVKFVFETFKKLRPGIPLKCLHGRMKQDKRMGIYSEFCQREEGSVLFSTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYHSGGRSVLFLMPSEMKMLEQLQSAKVPIQLIKANTKRLQPVSGLLAALLVKYPNFQQLAQRAFITYLRSIHIQKNKEVFDVMKLSIDEFSASLGLPMTPKIRFIDQKRRKSEKVSANSTFLVLESSDKENAFKTSDGELEYGDFKESDQGLLPPAPIDADAPSSEVEDAVPRTRILKKKKLKINVHRPVGTRVSFDDEGNPLAPLARLADIKTSIESFIVDNDKKDEFYKKRREELKEADKEDKLLERNRLREKRDKEKKKKLKRARKESQDDDDISGDEEDRPQKRSKKYYSDSDGEVDNKVENNFNTESSSVAELEELALKLLSSQRS 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10226767 10233092 - MC10g1042 Mch10g1261 678354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1261 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 275 IPR027417 -
Mch10g1261 740 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 219 227 IPR000629 -
Mch10g1261 740 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 295 449 IPR001650 -
Mch10g1261 740 Coils Coil 2 22 - -
Mch10g1261 740 Gene3D - 285 535 IPR027417 -
Mch10g1261 740 MobiDBLite consensus disorder prediction 690 713 - -
Mch10g1261 740 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 273 IPR014001 -
Mch10g1261 740 PANTHER RNA HELICASE 67 674 - GO:0005634(PANTHER)|GO:0006364(PANTHER)
Mch10g1261 740 Pfam DEAD/DEAH box helicase 91 262 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Mch10g1261 740 MobiDBLite consensus disorder prediction 649 664 - -
Mch10g1261 740 Coils Coil 639 671 - -
Mch10g1261 740 SMART helicmild6 326 411 IPR001650 -
Mch10g1261 740 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 67 95 IPR014014 GO:0003724(InterPro)
Mch10g1261 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 427 IPR027417 -
Mch10g1261 740 Gene3D - 54 279 IPR027417 -
Mch10g1261 740 MobiDBLite consensus disorder prediction 25 39 - -
Mch10g1261 740 SMART DUF4217_3 450 513 IPR025313 -
Mch10g1261 740 SMART ultradead3 86 290 IPR014001 -
Mch10g1261 740 Pfam Domain of unknown function (DUF4217) 463 511 IPR025313 -
Mch10g1261 740 CDD SF2_C_DEAD 287 420 - -
Mch10g1261 740 CDD DEADc_DDX10 79 276 - -
Mch10g1261 740 MobiDBLite consensus disorder prediction 25 49 - -
Mch10g1261 740 Pfam Helicase conserved C-terminal domain 299 410 IPR001650 -
Mch10g1261 740 MobiDBLite consensus disorder prediction 649 722 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1261 K14776 - - csv:101213480 1166.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1261 Mch-Chr10:10226767 Mch3g1656 Mch-Chr3:18296780 1.02E-101 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g503 . . . . Bpe09g00180 . . Bma13g01054 . . . . . . . . . . . . . . . . Cla10g00512 Cam10g0507 Cec10g0524 Cco10g0511 Clacu10g0528 Cmu10g1354 Cre10g0758 . . Cone14ag1140 Cone15ag1158 . Csa03g00520 . Cme06g02259 . Blo10g00825 . Bda12g00904 . . . . Sed14g0162 . . Cma04g00948 . . . . Cpe01g00859 Bhi11g00629 Tan01g1698 Cmetu12g0970 . . Mch10g1261 . . . . . . . . Lsi05g00605 . Chy06g01810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010643 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32