Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1340 ATGGCCGAACCGATGCAGGAGGTGGTTGTCGATGCGGAACCAACTGAACCCACCGTGACCCACTCCGGCGACAAGAGGCCAATTGGGTACGAGGGACACGACGGGGTTGTTGCTGCAGAGCCGCAGTTGAGCAAGAAGCCGCGGAATGGCCAGGAACTTGGTCGGAATCTCAGACGGGTTGCGGAGATTGTGTTGGTCATGTCCACGATGACGGCGGTGCGCGGCGGGAAGAAGCCGAGTGATGCCGAGGTCGAGTTGATGGCTGAGGCCAGGGCTAAGCTGGCTCAGATTTGTGAAGGATTGGCGCCGAAAGACATTATGGGAAGGGAAGGTATTAGCTCTGTGATTGAAGATTTGGGGCTGAATGAGAAGGCTAAGGATCACAAGTTAGGGTTTCGCGGTCCCAGGTTGACAATAGCGGAGAAATTGGCGATGGCTAAGAAGAAGATGGAAGATTCCAAGAAATATATCCCACCGTCAGCTTATGGATCTCATCCAACCCAAACAAACTTCACTCCATCAGTTGAGAGCCGTGGGGCATTGCCTACTGTACGGATGTTTCCTTCAGATAAATCAAGTCATGTACCGACTTCTGTGGGAGGCACTGCAGCTGCTCTGCCTTCAGGTCATGTTTCTGTCACTGGTTCTTCATCTATACAGGTTCAAGCACAACTACCAAGCAATGAAGTCAGAGCTCATATTATTTCAAGTGGATTTCCTATTAGTCATCAAGGAAGGGATTCTTCCCCGTTCCTGCATGGCGTTGAAAGACCGCTAAATGGGACATATGGATCTCAAATGCAAGTTAATTCTTCAGTAAATCACCCTCTGGCGAGTGCTCCAACTTGGTCTGCTCAAACTCAGTCTGCCTTGTCAGCAAAAGGTGGGCCAGAGCACAAGTCGCTGAATCATTCTGCTGTTAGTGTTCAGATAACCACAGACTCGAGCACATTAAGATCGTCTTCCCAAGCAGCGAGGAACCAGAGCTCTAGACCTTCAATTTCTCAAACTGTGACAGGGAGTATGGCTGGTCTGCAGCCGCATTTACAGAGCATGAACTTTGTGCAAGGATCTTCACTTTCTAATAACCACAATGAAATTGTCAAAATTATTCAGAAGCTGTTACAACCACAGCTTCCAGATCATCCTACCTGGAATCCTCCTTCAAGAGATTACATGAACAAGGCTGTGACTTGCCAAACTTGTCAAATTACCATCAATGAGATTGATAGTGTACTTATATGTGATGCTTGTGAGAAAGGATTTCACTTGAAATGTGTACAGTCACCTAATCAGAGAGCAATTCCTAGAGGCGAATGGCACTGCCCAAGATGTTTAACTATAAGCCATGGGAAGCCTTTACCTCCAAAATATGGGCGTGTCATGAGGAGTAACCCCCCACCAAAATTATCTGTCAACACCATTGGAACTCAGCCATCAGAGAAGAGATCAGGAACCATAGAACAAAAGGCTAGTGCTAGTCAGCTGAACTTGGTTTCTAATGGAGGTTCAGATTTGCAAAGTCCCCAGCATGCTGACCATGGAAGCAATACCAGTGATAATGAAACATCTGGTACCAAGACTCCAGATGTGGAAGAAATTCATGGAAATCATTTTCTACCAATTAGGAAAGACTTAGATGAGAAACCAGCCTCTTCAACTTCCCTGAATACCCCAGCCAAATCCTTGGGGCCGGTTTGTGACCCCTCTTCTGCTGAATTATCAAGTGAAAGATCTGTTCAGCAGATTAAAAGTTCTCAATCACCAAAAGGTGAAGATGGATCCTCTGAATCAAAAGCAGAGGCTCCAGAAGATCCCCAAACAGTGGCTGACAATGCTAGTGACCCTAAACCCCCAGATGTTTCTGAAATTGCTGATCAGAGAATGGTTTCTAATGGTCCAGAGGAACCCTACTCAACAAGTGCTCATGGCACTTCGAATGTGAAGAAAGATGATCATGAAATTCTGCAGGCAACTAATGTTGAAACTTTTGAAGCTAGCATCATAAATAGAGAAATTCTGCAGTCTGGGACTTCTTCAGATGACTTGCGTGATATTGAATGGATTGGAAAGCCACGTATTTTAGATGGGAAGGCATTTTACGACTCCTGTTGCATTGATGGTGTTACATATAAAGTTGAAGAATGTGCTCTTTTTCATTCCAACAATGGGAAATTGATGCCCTTTAGGCTTCAGGCAAGCAAATTATCAAACTATGCCATGTTCCATGATTACAATAAAGGGTCGAACTGGGCTGTTCTTAAGAAGTGTTACTTTCATGAGGATTTGCCGAAGGAAGTTGTCCACCTCCCCCCAAGCTCCCCAGAACACATTGAGGTATATGCATCCGATGTCGATGCCATTTTAATGGCAGGCTTAATTCGAAGCCCATGTGAAGTTCTTACTGTTGCCAAGTATAAAGAAGAATATGAAAGACGAAGGCAATTGGTTCTCGGGGCAGATAATGGAATGAAGCAAATTTTCCTGTGCAAATGGTTCTATATTGAAGCTGCAAAGGAGTTCATACCTTTTACGGGTGAAAACTTCACAGTACGTTACAGGCAAATTGGACTAATTAAGTAG 2583 45.14 MAEPMQEVVVDAEPTEPTVTHSGDKRPIGYEGHDGVVAAEPQLSKKPRNGQELGRNLRRVAEIVLVMSTMTAVRGGKKPSDAEVELMAEARAKLAQICEGLAPKDIMGREGISSVIEDLGLNEKAKDHKLGFRGPRLTIAEKLAMAKKKMEDSKKYIPPSAYGSHPTQTNFTPSVESRGALPTVRMFPSDKSSHVPTSVGGTAAALPSGHVSVTGSSSIQVQAQLPSNEVRAHIISSGFPISHQGRDSSPFLHGVERPLNGTYGSQMQVNSSVNHPLASAPTWSAQTQSALSAKGGPEHKSLNHSAVSVQITTDSSTLRSSSQAARNQSSRPSISQTVTGSMAGLQPHLQSMNFVQGSSLSNNHNEIVKIIQKLLQPQLPDHPTWNPPSRDYMNKAVTCQTCQITINEIDSVLICDACEKGFHLKCVQSPNQRAIPRGEWHCPRCLTISHGKPLPPKYGRVMRSNPPPKLSVNTIGTQPSEKRSGTIEQKASASQLNLVSNGGSDLQSPQHADHGSNTSDNETSGTKTPDVEEIHGNHFLPIRKDLDEKPASSTSLNTPAKSLGPVCDPSSAELSSERSVQQIKSSQSPKGEDGSSESKAEAPEDPQTVADNASDPKPPDVSEIADQRMVSNGPEEPYSTSAHGTSNVKKDDHEILQATNVETFEASIINREILQSGTSSDDLRDIEWIGKPRILDGKAFYDSCCIDGVTYKVEECALFHSNNGKLMPFRLQASKLSNYAMFHDYNKGSNWAVLKKCYFHEDLPKEVVHLPPSSPEHIEVYASDVDAILMAGLIRSPCEVLTVAKYKEEYERRRQLVLGADNGMKQIFLCKWFYIEAAKEFIPFTGENFTVRYRQIGLIK 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11697015 11716507 - MC10g1082 Mch10g1340 678433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1340 860 MobiDBLite consensus disorder prediction 303 338 - -
Mch10g1340 860 ProSiteProfiles Zinc finger PHD-type profile. 396 448 IPR019787 -
Mch10g1340 860 MobiDBLite consensus disorder prediction 453 622 - -
Mch10g1340 860 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 15 845 - -
Mch10g1340 860 SUPERFAMILY FYVE/PHD zinc finger 389 455 IPR011011 -
Mch10g1340 860 Pfam PHD-finger 399 445 IPR019787 -
Mch10g1340 860 MobiDBLite consensus disorder prediction 572 593 - -
Mch10g1340 860 MobiDBLite consensus disorder prediction 467 525 - -
Mch10g1340 860 MobiDBLite consensus disorder prediction 245 268 - -
Mch10g1340 860 ProSitePatterns Zinc finger PHD-type signature. 399 445 IPR019786 -
Mch10g1340 860 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 453 IPR013083 -
Mch10g1340 860 MobiDBLite consensus disorder prediction 1 32 - -
Mch10g1340 860 CDD PHD_SF 398 445 - -
Mch10g1340 860 ProSiteProfiles BAH domain profile. 709 845 IPR001025 GO:0003682(InterPro)
Mch10g1340 860 MobiDBLite consensus disorder prediction 526 550 - -
Mch10g1340 860 Gene3D - 690 855 IPR043151 -
Mch10g1340 860 MobiDBLite consensus disorder prediction 284 338 - -
Mch10g1340 860 SMART PHD_3 398 446 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1340 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1340 Mch-Chr10:11697015 Mch2g1651 Mch-Chr2:14191651 4.27E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42502 PF00628 PHD 3.10E-08 CL0390 Mch TR