Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g1359 | ATGAGGAGAGGGAGAGGGGCTGCAGCGGCGGCGGCTGCGGCGGCGGCGGCGCGTGAAGGGATGGGATCCGGGAAGGAGCCGAGATACAGAGGCGTTCGGAAGAGGCCTTGGGGGAGATTCGCGGCGGAGATCAGAGACCCGTGGAAGAAGACCAGAGTGTGGCTGGGGACGTTCGATTCGGCGGAGGACGCGGCGCGTGCTTACGACGCGGCCGCCCGCACGCTCCGTGGCCCCAAGGCCAAGACCAACTTCCCCCTCGTCTCCAACCCCAATCCGACGTCGTTTTTCGACTACCCCTACCCTAATCCTCACCATCAAAGTCAAAACCCTCCCACCAACATCAACGCCTCAGATCCGTTCTCCGATCACCGATTCTACGCCGCCGCTGGGTTCCAGGAGCCGCCGGAGATTAATCCCCAGAGGCCCACTTCCAGCAGCCTGAGCTCCACTGTGGAGTCCTTCAGCGGGCCCAGGCCCCCCTCCGCCTCAACTATGCTCCCTGCCCCCCGCCGCTACCCCCGCACGCCGCCGCTCGTTCCGGAGGATTGCCATAGCGACTGCGATTCCTCCTCCTCCGTCGTCGACGACGGCGACATCGCCTCCTCCTCCTCCTCCATCCGCCGGAAACCCCCTCTTCCTTTCGATCTCAATATTCCTCCCTCCGATCAACCTGACTTCGCCGCCGATGATCTCCGATCTACCGCCTTGTGCCTC | 714 | 64.43 | MRRGRGAAAAAAAAAAAREGMGSGKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPLVSNPNPTSFFDYPYPNPHHQSQNPPTNINASDPFSDHRFYAAAGFQEPPEINPQRPTSSSLSSTVESFSGPRPPSASTMLPAPRRYPRTPPLVPEDCHSDCDSSSSVVDDGDIASSSSSIRRKPPLPFDLNIPPSDQPDFAADDLRSTALCL | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 12158064 | 12158777 | - | MC10g1094 | Mch10g1359 | 678452 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g1359 | 238 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Mch10g1359 | 238 | SUPERFAMILY | DNA-binding domain | 28 | 86 | IPR016177 | GO:0003677(InterPro) | |
Mch10g1359 | 238 | MobiDBLite | consensus disorder prediction | 94 | 120 | - | - | |
Mch10g1359 | 238 | FunFam | Ethylene-responsive transcription factor 2 | 28 | 86 | - | - | |
Mch10g1359 | 238 | CDD | AP2 | 27 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g1359 | 238 | Pfam | AP2 domain | 27 | 77 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g1359 | 238 | MobiDBLite | consensus disorder prediction | 162 | 176 | - | - | |
Mch10g1359 | 238 | MobiDBLite | consensus disorder prediction | 137 | 160 | - | - | |
Mch10g1359 | 238 | MobiDBLite | consensus disorder prediction | 185 | 208 | - | - | |
Mch10g1359 | 238 | PRINTS | Ethylene responsive element binding protein signature | 51 | 67 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g1359 | 238 | PRINTS | Ethylene responsive element binding protein signature | 29 | 40 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g1359 | 238 | ProSiteProfiles | AP2/ERF domain profile. | 28 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g1359 | 238 | MobiDBLite | consensus disorder prediction | 133 | 227 | - | - | |
Mch10g1359 | 238 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 11 | 199 | - | - | |
Mch10g1359 | 238 | Gene3D | AP2/ERF domain | 28 | 87 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g1359 | 238 | SMART | rav1_2 | 28 | 91 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch10g1359 | 238 | MobiDBLite | consensus disorder prediction | 94 | 119 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g1359 | Mch-Chr10:12158064 | Mch2g0690 | Mch-Chr2:4735721 | 1.60E-61 | dispersed | |
Mch10g1359 | Mch-Chr10:12158064 | Mch4g0091 | Mch-Chr4:600449 | 8.97E-67 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42504 | PF00847 | AP2 | 8.60E-15 | CL0081 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g1359 | K09286 | - | rcu:8269014 | 227.254 |