Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1359 ATGAGGAGAGGGAGAGGGGCTGCAGCGGCGGCGGCTGCGGCGGCGGCGGCGCGTGAAGGGATGGGATCCGGGAAGGAGCCGAGATACAGAGGCGTTCGGAAGAGGCCTTGGGGGAGATTCGCGGCGGAGATCAGAGACCCGTGGAAGAAGACCAGAGTGTGGCTGGGGACGTTCGATTCGGCGGAGGACGCGGCGCGTGCTTACGACGCGGCCGCCCGCACGCTCCGTGGCCCCAAGGCCAAGACCAACTTCCCCCTCGTCTCCAACCCCAATCCGACGTCGTTTTTCGACTACCCCTACCCTAATCCTCACCATCAAAGTCAAAACCCTCCCACCAACATCAACGCCTCAGATCCGTTCTCCGATCACCGATTCTACGCCGCCGCTGGGTTCCAGGAGCCGCCGGAGATTAATCCCCAGAGGCCCACTTCCAGCAGCCTGAGCTCCACTGTGGAGTCCTTCAGCGGGCCCAGGCCCCCCTCCGCCTCAACTATGCTCCCTGCCCCCCGCCGCTACCCCCGCACGCCGCCGCTCGTTCCGGAGGATTGCCATAGCGACTGCGATTCCTCCTCCTCCGTCGTCGACGACGGCGACATCGCCTCCTCCTCCTCCTCCATCCGCCGGAAACCCCCTCTTCCTTTCGATCTCAATATTCCTCCCTCCGATCAACCTGACTTCGCCGCCGATGATCTCCGATCTACCGCCTTGTGCCTC 714 64.43 MRRGRGAAAAAAAAAAAREGMGSGKEPRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARTLRGPKAKTNFPLVSNPNPTSFFDYPYPNPHHQSQNPPTNINASDPFSDHRFYAAAGFQEPPEINPQRPTSSSLSSTVESFSGPRPPSASTMLPAPRRYPRTPPLVPEDCHSDCDSSSSVVDDGDIASSSSSIRRKPPLPFDLNIPPSDQPDFAADDLRSTALCL 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12158064 12158777 - MC10g1094 Mch10g1359 678452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1359 238 MobiDBLite consensus disorder prediction 1 31 - -
Mch10g1359 238 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677(InterPro)
Mch10g1359 238 MobiDBLite consensus disorder prediction 94 120 - -
Mch10g1359 238 FunFam Ethylene-responsive transcription factor 2 28 86 - -
Mch10g1359 238 CDD AP2 27 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g1359 238 Pfam AP2 domain 27 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g1359 238 MobiDBLite consensus disorder prediction 162 176 - -
Mch10g1359 238 MobiDBLite consensus disorder prediction 137 160 - -
Mch10g1359 238 MobiDBLite consensus disorder prediction 185 208 - -
Mch10g1359 238 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g1359 238 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g1359 238 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g1359 238 MobiDBLite consensus disorder prediction 133 227 - -
Mch10g1359 238 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 199 - -
Mch10g1359 238 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g1359 238 SMART rav1_2 28 91 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g1359 238 MobiDBLite consensus disorder prediction 94 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1359 Mch-Chr10:12158064 Mch2g0690 Mch-Chr2:4735721 1.60E-61 dispersed
Mch10g1359 Mch-Chr10:12158064 Mch4g0091 Mch-Chr4:600449 8.97E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42504 PF00847 AP2 8.60E-15 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1359 K09286 - rcu:8269014 227.254