Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1390 ATGGCAACTTTTCAACTCACAAATCCGAAGGGTTTATTATCAACTTCTTCAATTCGCCCTCAGTTTTATCATAAGGGGTCCTTCTTTCCCTCCAACTTGCCGTCGTTATCGTCTTCTCCTAATGCCCAGCGGAAATGCCCATCTAGAAGACACCAAGTTGGCGTTGTGAGTTGCTCATTTTCACCTATGGAGTCGGCCAAGATTAAAGTAGTAGGGGTTGGTGGAGGCGGCAACAATGCCGTTAATCGCATGATTGGCAGCGGCTTGAAGGGTGTTGATTTCTATGCTATAAACACGGATTCTCAAGCTTTACTACAGTCTGCCGCTGAGAATCCACTTCAAATTGGAGAGCTTCTGACACGTGGTCTAGGTACTGGTGGAAATCCCAATTTAGGGGAACAAGCGGCAGAAGAATCAAAAGAAGCGATAGCTACTGCTCTCAAGGGCTCTGATCTTGTTTTTATAACAGCAGGTATGGGTGGAGGCACTGGGTCAGGTGCAGCCCCAGTTGTCGCCCAAATTTCAAAAGAGGCAGGTTACCTCACTGTTGGTGTGGTTACTTTTCCATTCAGTTTTGAAGGAAGAAAACGATCCTTGCAGGCACTGGAGGCCATTGAAAAACTACAGAAAAATGTTGACACTCTTATTGTAATCCCCAATGATCGGCTGCTTGATATTGCTGATGAACAAACACCCCTTCAAGATGCTTTCCTTCTTGCTGATGATGTCCTACGTCAAGGAGTGCAAGGAATTTCTGATATAATTACGATTCCGGGGTTGGTCAATGTGGATTTTGCTGATGTGAAAGCTGTCATGAAAGACTCGGGAACTGCAATGCTCGGAGTTGGTGTTTCCTCCAGCAAAAATCGCGCAGAAGAGGCAGCTGAGCAAGCAACTTTGGCTCCCTTGATTGGATCATCCATTCAATCAGCTACAGGAGTAGTATATAACATTACTGGGGGAAAGGACATAACTCTACAGGAAGTGAACAGAGTGTCTCAGGTTGTTACGAGTTTGGCAGATCCGTCTGCAAACATAATATTCGGGGCGGTCGTGGATGATAGGTACAGTGGAGAAATCCATGTAACTATAATTGCAACAGGATTCTCTCAGTCCTTTCAGAAGACACTCTTAGCTGACCCCAGGGCTTCAAAACTGATTGATAAAGCCGGTGGAGGAGTGCAAGAAAAGAGCATCAAGACTTCGACCCTCCCTCTTAACTTATCGCCAGCTGCTTCCCCGACTCGGAGTCGAAGGCTCTTCTTTTAG 1269 46.02 MATFQLTNPKGLLSTSSIRPQFYHKGSFFPSNLPSLSSSPNAQRKCPSRRHQVGVVSCSFSPMESAKIKVVGVGGGGNNAVNRMIGSGLKGVDFYAINTDSQALLQSAAENPLQIGELLTRGLGTGGNPNLGEQAAEESKEAIATALKGSDLVFITAGMGGGTGSGAAPVVAQISKEAGYLTVGVVTFPFSFEGRKRSLQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYSGEIHVTIIATGFSQSFQKTLLADPRASKLIDKAGGGVQEKSIKTSTLPLNLSPAASPTRSRRLFF 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12732618 12747931 + MC10g1109 Mch10g1390 678483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1390 422 CDD FtsZ_type1 83 368 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Mch10g1390 422 SMART Tubulin_4 67 259 IPR003008 GO:0005525(InterPro)
Mch10g1390 422 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 160 166 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Mch10g1390 422 ProSitePatterns FtsZ protein signature 2. 151 172 IPR020805 GO:0005525(InterPro)
Mch10g1390 422 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 42 395 IPR045061 GO:0003924(PANTHER)|GO:0003924(InterPro)|GO:0005525(PANTHER)|GO:0005525(InterPro)|GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0010020(PANTHER)|GO:0032153(PANTHER)|GO:0048285(PANTHER)|GO:0051301(PANTHER)
Mch10g1390 422 Pfam Tubulin/FtsZ family, GTPase domain 67 227 IPR003008 GO:0005525(InterPro)
Mch10g1390 422 SMART Tubulin_C_4 261 378 IPR018316 -
Mch10g1390 422 NCBIfam cell division protein FtsZ 61 376 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Mch10g1390 422 SUPERFAMILY Tubulin C-terminal domain-like 261 376 IPR008280 -
Mch10g1390 422 PRINTS Cell division protein FtsZ signature 152 172 IPR003008 GO:0005525(InterPro)
Mch10g1390 422 PRINTS Cell division protein FtsZ signature 243 265 IPR003008 GO:0005525(InterPro)
Mch10g1390 422 PRINTS Cell division protein FtsZ signature 180 201 IPR003008 GO:0005525(InterPro)
Mch10g1390 422 PRINTS Cell division protein FtsZ signature 266 287 IPR003008 GO:0005525(InterPro)
Mch10g1390 422 FunFam Cell division protein FtsZ 1, chloroplastic 232 369 - -
Mch10g1390 422 ProSitePatterns FtsZ protein signature 1. 98 132 IPR020805 GO:0005525(InterPro)
Mch10g1390 422 Gene3D - 275 380 IPR037103 -
Mch10g1390 422 SUPERFAMILY Tubulin nucleotide-binding domain-like 66 262 IPR036525 -
Mch10g1390 422 Gene3D Tubulin/FtsZ, GTPase domain 60 274 IPR036525 -
Mch10g1390 422 Pfam FtsZ family, C-terminal domain 276 369 IPR024757 -
Mch10g1390 422 FunFam Cell division protein FtsZ 1, chloroplastic 60 274 - -
Mch10g1390 422 Hamap Cell division protein FtsZ [ftsZ]. 63 391 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1390 K03531 - - csv:101222908 688.723
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1390 Mch-Chr10:12732618 Mch5g1617 Mch-Chr5:17039720 3.57E-124 dispersed
Mch10g1390 Mch-Chr10:12732618 Mch1g0930 Mch-Chr1:12617448 9.51E-125 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g585 . . . . . . Bma10g00581 Bma13g01095 . Cmo06g00884 . . . . . . . . . . . . . . Cla10g00460 Cam10g0446 Cec10g0469 Cco10g0457 Clacu10g0467 Cmu10g1296 Cre10g0701 Cone6ag0040 Cone9ag0046 . . . Csa03g00458 . Cme06g02820 Blo07g00880 Blo10g00853 . Bda12g00939 . . . . . . . . . . . . . Bhi11g00549 . . . . Mch10g1390 . . . . . . . . Lsi05g00545 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006787 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37